RetrogeneDB ID: | retro_sara_220 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_0:6135..6708(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSARG00000005184 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 60.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
MQTIKCVVVGDGAVGKTCLLISYTTN.FP.EY.PTVFDNY.......G....L.L.DTAGQE.YDRLR.L | |
Retrocopy | MQTIKCVVVGDGAVGKTCLLISYTTNAFPEEYIPTVFDNYSAQTSVDGQTVSLNLWDTAGQEEYDRLRTL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE |
SYPQT..F..CFS...PSS..NV..KW.PE..HHCP..P.LLVGT..DLR.D..T..KL......P.TP. | |
Retrocopy | SYPQTNIFVICFSIGNPSSYANVRHKWHPEVSHHCPNVPVLLVGTKRDLRSDLETVKKLKEQSLVPTTPQ |
Parental | TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL |
....LA....AVKY.ECSAL.Q.G...VF.EA..A.L.P...K....CVLL | |
Retrocopy | QGTSLAKQVGAVKYLECSALMQDGVHEVFSEAVRAVLYPATKKNTKKCVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |