RetrogeneDB ID: | retro_cfam_1587 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 36:12135941..12136505(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDC42 | ||
Ensembl ID: | ENSCAFG00000014707 | ||
Aliases: | None | ||
Description: | Canis lupus familiaris cell division cycle 42 (GTP binding protein, 25kDa) (CDC42), mRNA. [Source:RefSeq mRNA;Acc:NM_001003254] |
Percent Identity: | 81.44 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRP |
MQTIK..VVGDGA.GKTCLLISY.TNKFPSEYV.TV.....A.T...G.EPYTLGLFDTAGQEDYDRL.P | |
Retrocopy | MQTIK-FVVGDGAIGKTCLLISYSTNKFPSEYVLTVTSMQ<AMTMIGG-EPYTLGLFDTAGQEDYDRLQP |
Parental | LSYPQTDVFLVCFSV-VSPSSFENVKEKWVPEITHHCP-KTPFLLVGTQIDLRDDPSTIEKLAKNKQKPI |
L..PQTDVFLVCFS..VSP.SFENVKEKWVPEITHHCP.K.PFLLVGTQIDLRDDPSTIE.LAKNKQK.I | |
Retrocopy | LNCPQTDVFLVCFSA<VSPFSFENVKEKWVPEITHHCP<KAPFLLVGTQIDLRDDPSTIEELAKNKQKSI |
Parental | TPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL |
TPETAEKL..DLK.VKYVECSA.T..GLKN.FD.A.L..LEPPEPKKSRRCVLL | |
Retrocopy | TPETAEKLTSDLKVVKYVECSAFT**GLKNGFDKAMLTTLEPPEPKKSRRCVLL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .00 RPM | 39 .65 RPM |
SRP017611_brain | 0 .00 RPM | 32 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 27 .67 RPM |
SRP017611_liver | 0 .00 RPM | 5 .80 RPM |