RetrogeneDB ID: | retro_ocun_60 | ||
Retrocopylocation | Organism: | Rabbit (Oryctolagus cuniculus) | |
Coordinates: | 11:57563598..57564174(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOCUG00000003073 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSOCUG00000009986 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 99.46 % |
Parental protein coverage: | 90.73 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL | |
Retrocopy | MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPL |
Parental | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPE |
SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEK.AKNKQKPITPE | |
Retrocopy | SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKHAKNKQKPITPE |
Parental | TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSR |
TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSR | |
Retrocopy | TAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 8 .50 RPM | 52 .43 RPM |
SRP017611_kidney | 8 .72 RPM | 33 .95 RPM |
SRP017611_liver | 2 .39 RPM | 11 .02 RPM |