RetrogeneDB ID: | retro_pabe_579 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:33155747..33156518(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 86.87 % |
Parental protein coverage: | 98.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDG |
PKKHLK.VAAPKHWML.KLT.VFAP.PS.GPHKLRECLPLIIFLRNRLKY.L...E.KKICMQ.FIKIDG | |
Retrocopy | PKKHLKWVAAPKHWMLEKLTSVFAPCPSSGPHKLRECLPLIIFLRNRLKYDLK--ERKKICMQQFIKIDG |
Parental | KVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDA |
.V.TDITYPAG.MDVISID..GENF.LIYDTK..F.VH.ITPE.AKYKLCKVRKIFVGTKGIPHLVTHDA | |
Retrocopy | EV*TDITYPAGLMDVISIDEMGENFCLIYDTKSCFDVHLITPEVAKYKLCKVRKIFVGTKGIPHLVTHDA |
Parental | RTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDAN |
RTI.Y.DPLIKVNDTIQIDLETGKITDFIKFD.G.LCMVTGGANL.RIGVIT.RERHPGSFDVVHVKDAN | |
Retrocopy | RTIHYLDPLIKVNDTIQIDLETGKITDFIKFDAGKLCMVTGGANLERIGVITDRERHPGSFDVVHVKDAN |
Parental | GNSFATRLSNIFVIGKGNKSWISLPRGKGIRLTIAEERDKRLAAKQSSG |
GNSFA..L.NIFVIGKGNK.WISLP.GKGI.LTIAEERDKRLAAKQSSG | |
Retrocopy | GNSFAAVLPNIFVIGKGNKPWISLPQGKGIHLTIAEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 73 .08 RPM |
SRP007412_heart | 0 .00 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .00 RPM | 131 .16 RPM |
SRP007412_liver | 0 .00 RPM | 137 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_656 |
Gorilla gorilla | retro_ggor_572 |