RetrogeneDB ID: | retro_mmus_1092 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 13:34865800..34866577(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps4x | ||
Ensembl ID: | ENSMUSG00000031320 | ||
Aliases: | Rps4x, Rps4, Rps4-1 | ||
Description: | ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158] |
Percent Identity: | 85.34 % |
Parental protein coverage: | 99.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRL-KYALTGDEVKK-ICMQR |
MA.GPKK.L......K...LDKL..VFAP.PSTGPH.LRECLPLIIFLRNR...YALTGDEVKK.ICMQ. | |
Retrocopy | MAYGPKKTLEVCSCSK--TLDKLADVFAPHPSTGPHRLRECLPLIIFLRNRV<MYALTGDEVKK>ICMQL |
Parental | FIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPH |
FIKID.KVRTDITYPAGFMDVISIDKT.ENFRLIYDTKGRFAVH.ITP.EAKYKLCKVRKIFVGTKGI.. | |
Retrocopy | FIKIDWKVRTDITYPAGFMDVISIDKTRENFRLIYDTKGRFAVHHITPKEAKYKLCKVRKIFVGTKGISN |
Parental | -LVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERH-PGSFD |
.LVTHDARTIRYPDPLIKVNDTIQIDLETGK.TDFIKFDTGNLCMVTGGA.LGRIGVITN.ERH.P..F. | |
Retrocopy | <LVTHDARTIRYPDPLIKVNDTIQIDLETGKVTDFIKFDTGNLCMVTGGAKLGRIGVITNKERH>PALF- |
Parental | VVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSS |
VVHVKDANGNSFAT..SNIFVIGKGNKPWISLP.GKGIRLTI.EER.KRLAAKQSS | |
Retrocopy | VVHVKDANGNSFATCPSNIFVIGKGNKPWISLP*GKGIRLTIVEERGKRLAAKQSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 93 .43 RPM |
SRP007412_cerebellum | 0 .04 RPM | 46 .29 RPM |
SRP007412_heart | 0 .00 RPM | 123 .84 RPM |
SRP007412_kidney | 0 .08 RPM | 110 .38 RPM |
SRP007412_liver | 0 .03 RPM | 108 .09 RPM |
SRP007412_testis | 0 .00 RPM | 8 .42 RPM |