RetrogeneDB ID: | retro_mmus_797 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 11:60449400..60449811(-) | ||
Located in intron of: | ENSMUSG00000018415 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000084249 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps4x | ||
Ensembl ID: | ENSMUSG00000031320 | ||
Aliases: | Rps4x, Rps4, Rps4-1 | ||
Description: | ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158] |
Percent Identity: | 80.29 % |
Parental protein coverage: | 52.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVG |
.ICMQ.F...DGKV.TDIT.PAGFM.V.S.D...ENF.LIYDTKGRFA.HR..PEEAK.KLCKVRKIFVG | |
Retrocopy | QICMQCFTEVDGKVKTDITCPAGFMHVLSTDRSSENFHLIYDTKGRFALHRSIPEEAKSKLCKVRKIFVG |
Parental | TKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRE |
TKGIPHLVTHDA.TI.YPDPLIKVNDTIQIDL..GKITDFIKFDTGNLCMVT.GANLGRIGV...R. | |
Retrocopy | TKGIPHLVTHDAPTI*YPDPLIKVNDTIQIDL*MGKITDFIKFDTGNLCMVTEGANLGRIGVVIKRD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .07 RPM | 93 .43 RPM |
SRP007412_cerebellum | 0 .04 RPM | 46 .29 RPM |
SRP007412_heart | 0 .00 RPM | 123 .84 RPM |
SRP007412_kidney | 0 .06 RPM | 110 .38 RPM |
SRP007412_liver | 0 .03 RPM | 108 .09 RPM |
SRP007412_testis | 0 .32 RPM | 8 .42 RPM |
ENCODE library ID | Target | ChIP-Seq Peak coordinates |
---|---|---|
ENCFF001YIJ | POLR2A | 11:60450059..60450259 |