RetrogeneDB ID: | retro_mmus_2541 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 5:3875364..3876150(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps4x | ||
Ensembl ID: | ENSMUSG00000031320 | ||
Aliases: | Rps4x, Rps4, Rps4-1 | ||
Description: | ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158] |
Percent Identity: | 95.8 % |
Parental protein coverage: | 99.62 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | ARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIK |
ARGPKKHLKRVAAPKHWMLDKLTG.FAP.PSTGPHKLRECLPLIIFLRNRLKYALTGDEVK.ICMQRFIK | |
Retrocopy | ARGPKKHLKRVAAPKHWMLDKLTGMFAPHPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKEICMQRFIK |
Parental | IDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVT |
IDGKVRTDI.YPAGFMDVISIDK..ENFRLI.DTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVT | |
Retrocopy | IDGKVRTDIAYPAGFMDVISIDKNRENFRLI*DTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVT |
Parental | HDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVK |
HDARTIRYPD.LIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRI.VITNRERHPGSFDVVHVK | |
Retrocopy | HDARTIRYPDSLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIVVITNRERHPGSFDVVHVK |
Parental | DANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKRLAAKQSSG |
DA.GNSFATRLSNIFVIGKGNKPWISLPRGKGIRLT.AEERDKRLAAKQSSG | |
Retrocopy | DASGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTFAEERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 93 .43 RPM |
SRP007412_cerebellum | 0 .04 RPM | 46 .29 RPM |
SRP007412_heart | 0 .16 RPM | 123 .84 RPM |
SRP007412_kidney | 0 .10 RPM | 110 .38 RPM |
SRP007412_liver | 0 .05 RPM | 108 .09 RPM |
SRP007412_testis | 0 .00 RPM | 8 .42 RPM |