RetrogeneDB ID: | retro_pabe_679 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 11:19304007..19304572(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 86.84 % |
Parental protein coverage: | 71.86 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MARGPKKHLKR-VAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRF |
MA.GPKKHL....A.PKHWML.KLT.VFAP..ST..HKLRECLP.I.FLRNRLKYALTGDEVK.I.MQRF | |
Retrocopy | MAHGPKKHLNH>TATPKHWMLHKLTSVFAPCLSTSVHKLRECLPFILFLRNRLKYALTGDEVK-IRMQRF |
Parental | IKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHL |
IKIDGKVRTDITYPAGFMDVISI.KTG.NF.LIYDTKG.FAVH.ITPEEAKYK.CKVRKIFV.TKGIPHL | |
Retrocopy | IKIDGKVRTDITYPAGFMDVISIGKTGGNFCLIYDTKGCFAVHHITPEEAKYKWCKVRKIFVDTKGIPHL |
Parental | VTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANL |
.THDARTI.YPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANL | |
Retrocopy | GTHDARTICYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 73 .08 RPM |
SRP007412_heart | 0 .00 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .03 RPM | 131 .16 RPM |
SRP007412_liver | 0 .00 RPM | 137 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_875 |
Pan troglodytes | retro_ptro_3032 |
Gorilla gorilla | retro_ggor_711 |