RetrogeneDB ID: | retro_pabe_2629 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:38016934..38017471(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 86.11 % |
Parental protein coverage: | 68.44 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MA.GPK.HLK.VA.PKHWMLDKLT.VFAP.P...PHKLRECLPLIIF.RNRLKYALTGDEVK.ICMQ.FI | |
Retrocopy | MACGPKRHLK*VATPKHWMLDKLTSVFAPCPFISPHKLRECLPLIIFPRNRLKYALTGDEVK-ICMQGFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
K.DGKVRTDITYPAGF.DVISIDKTG.NF.LIYDTK..FAV.RITP.EAKYKL.KVRKIFVGTKGIPHLV | |
Retrocopy | KVDGKVRTDITYPAGFTDVISIDKTGDNFHLIYDTKDHFAVRRITPKEAKYKLGKVRKIFVGTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNL |
THDAR.I.YPDPLIKVNDTIQIDLETGKITDFIKF.TG.L | |
Retrocopy | THDARSIHYPDPLIKVNDTIQIDLETGKITDFIKFNTGTL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .12 RPM | 73 .08 RPM |
SRP007412_heart | 0 .00 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .07 RPM | 131 .16 RPM |
SRP007412_liver | 0 .03 RPM | 137 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3162 |
Pan troglodytes | retro_ptro_2276 |
Gorilla gorilla | retro_ggor_1354 |
Macaca mulatta | retro_mmul_1999 |