RetrogeneDB ID: | retro_pabe_1784 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 20:23624257..23625019(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 91.02 % |
Parental protein coverage: | 96.58 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTD |
K.VAAPKHWMLDKLTG.FAPRPST.PHKLRECLPLIIFLRNRLKYALTG.EVKKICMQ.FIKIDGKVRTD | |
Retrocopy | KQVAAPKHWMLDKLTGMFAPRPSTSPHKLRECLPLIIFLRNRLKYALTGEEVKKICMQWFIKIDGKVRTD |
Parental | ITYPAGFMDVISIDKTGENFRLI-YDTKGRFAVHRITPEEAKYKLCKVR-KIFVGTKGIPHLVTHDARTI |
ITYPAGFMDVISIDK.GENF.LI..DTKGRFAVHRITPEEAKYKL.KVR.KIFVGTKGIP.LVTHDARTI | |
Retrocopy | ITYPAGFMDVISIDKMGENFCLI<LDTKGRFAVHRITPEEAKYKL*KVR>KIFVGTKGIPYLVTHDARTI |
Parental | RYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNS |
.YPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVH.KDANGNS | |
Retrocopy | CYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHMKDANGNS |
Parental | FATRLSNIFVIGKGNKSWISLPRGKGIRLTIAEERDKRLAAKQSSG |
FAT.LSNIFV..KGN..WISLP.GKGI.LTIAEERDKRLA..QSSG | |
Retrocopy | FAT*LSNIFVVCKGNIPWISLP*GKGICLTIAEERDKRLATNQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .22 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 73 .08 RPM |
SRP007412_heart | 0 .00 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .10 RPM | 131 .16 RPM |
SRP007412_liver | 0 .12 RPM | 137 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2443 |
Gorilla gorilla | retro_ggor_1520 |