RetrogeneDB ID: | retro_mmus_2487 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 4:99103056..99103635(-) | ||
Located in intron of: | ENSMUSG00000028556 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000081733 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps4x | ||
Ensembl ID: | ENSMUSG00000031320 | ||
Aliases: | Rps4x, Rps4, Rps4-1 | ||
Description: | ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158] |
Percent Identity: | 88.14 % |
Parental protein coverage: | 73.76 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | KKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFV |
..ICMQRFIKI.GKVRT.I.YPAGFMDVISIDK.GENFRLIYDTKG.FAVHR.TPEEAK.KL.KVRK.FV | |
Retrocopy | EQICMQRFIKIGGKVRTYIAYPAGFMDVISIDKAGENFRLIYDTKGHFAVHRVTPEEAKSKLYKVRKSFV |
Parental | GTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERH |
GTKGIPHLV.HDA.TI.YPDPLIKVNDTIQIDLETGKITDF.KFDTGNLCMVTGGANLGRI.VIT.RERH | |
Retrocopy | GTKGIPHLVSHDAHTIQYPDPLIKVNDTIQIDLETGKITDF-KFDTGNLCMVTGGANLGRIDVITIRERH |
Parental | PGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR |
PGSFDVVHVKDA.GNSFATRLSNIFV.GK.NKPWI..PRGKGIRLTIAEER.KR | |
Retrocopy | PGSFDVVHVKDAHGNSFATRLSNIFVVGKDNKPWIPFPRGKGIRLTIAEERGKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 93 .43 RPM |
SRP007412_cerebellum | 0 .04 RPM | 46 .29 RPM |
SRP007412_heart | 0 .03 RPM | 123 .84 RPM |
SRP007412_kidney | 0 .06 RPM | 110 .38 RPM |
SRP007412_liver | 0 .03 RPM | 108 .09 RPM |
SRP007412_testis | 0 .00 RPM | 8 .42 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_107140 | 319 libraries | 500 libraries | 247 libraries | 4 libraries | 2 libraries |