RetrogeneDB ID: | retro_pabe_580 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 10:33162456..33163155(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 85.96 % |
Parental protein coverage: | 89.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGEN |
P.PS.GPH.LRECLPLIIFLRNRLKY.L...E.KKICMQ.FIKIDG.V.TDITYPAG.MDVISID..GEN | |
Retrocopy | PCPSSGPHRLRECLPLIIFLRNRLKYDLK--ERKKICMQQFIKIDGEV*TDITYPAGLMDVISIDEMGEN |
Parental | FRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGK |
F.LIYDTK....VH.ITPE.AKYKLCKVRKIFVGTKGIPHLVTHDARTI.Y.DPLIKVNDTIQIDLETGK | |
Retrocopy | FCLIYDTKSCVDVHLITPEVAKYKLCKVRKIFVGTKGIPHLVTHDARTIHYLDPLIKVNDTIQIDLETGK |
Parental | ITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKSWISL |
ITDFIKFD.G.LCMVTGGANL.RIGVITNRERHPGSFDVVHVKDANGNSFA..L.NIFVIGKGNK.WISL | |
Retrocopy | ITDFIKFDAGKLCMVTGGANLERIGVITNRERHPGSFDVVHVKDANGNSFAALLPNIFVIGKGNKPWISL |
Parental | PRGKGIRLTIAEERDKRLAAKQSSG |
P.GKGI.LTIA.ERDKRLAAKQSSG | |
Retrocopy | PQGKGIHLTIAKERDKRLAAKQSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 73 .08 RPM |
SRP007412_heart | 0 .00 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .10 RPM | 131 .16 RPM |
SRP007412_liver | 0 .00 RPM | 137 .65 RPM |