RetrogeneDB ID: | retro_pabe_1401 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 16:62512299..62512803(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 73.21 % |
Parental protein coverage: | 63.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | DKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQI |
.KTGE.F.L.YDTKG.FAV.RIT.EEAKY.LCKVRK...G.KGIP.LVTHD..TI.Y.DPLIKVN.T.QI | |
Retrocopy | EKTGEHFCLVYDTKGCFAVYRITVEEAKYNLCKVRKVTMGMKGIPYLVTHDTGTIHYADPLIKVNNTVQI |
Parental | DLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGN |
DL.TGKI..FIKF..GN.CMV.GGA.L...GV.TNRERHPGS..VVHV.DANGNS.A.RLSNIFV.G.G. | |
Retrocopy | DLGTGKIINFIKFHAGNVCMVIGGASLSHVGVTTNRERHPGSLSVVHVRDANGNSLALRLSNIFVTGNGS |
Parental | KSWISLPRGKGIRLTIAEERDKRLAAKQ |
K.WISLPR.KG.RLTIAEE..KRLA.KQ | |
Retrocopy | KPWISLPREKGTRLTIAEEGEKRLATKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 73 .08 RPM |
SRP007412_heart | 6 .11 RPM | 87 .60 RPM |
SRP007412_kidney | 21 .35 RPM | 131 .16 RPM |
SRP007412_liver | 18 .42 RPM | 137 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_1704 |
Pan troglodytes | retro_ptro_1153 |
Gorilla gorilla | retro_ggor_1278 |