RetrogeneDB ID: | retro_pabe_3325 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 8:49008206..49008809(-) | ||
Located in intron of: | ENSPPYG00000018571 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPPYG00000020462 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 79.9 % |
Parental protein coverage: | 76.81 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | KKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFV |
.KICMQ.FIKIDG.VRTDIT.PAGF.DV..ID..GENFRLIYDTKG.FA.HR.TPEE.KYKLCKVRKIF. | |
Retrocopy | EKICMQWFIKIDGNVRTDITHPAGFIDVMGID*MGENFRLIYDTKGCFAAHRVTPEEPKYKLCKVRKIFM |
Parental | GTKGIPHLVTHDARTIRYPDPL-IKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRER |
GTKGIPHLVTHDAR.I.Y.DPL.I.VND.IQ.DLETGKITDFIKFDTGNL.MVTGGAN.GRIGVIT.RER | |
Retrocopy | GTKGIPHLVTHDARIICYLDPL>IEVNDPIQTDLETGKITDFIKFDTGNLWMVTGGANWGRIGVITHRER |
Parental | HPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKSWISLPRG-KGIRLTIAEERDKRLAAKQSSG |
HP.SFDVVHVKDANGNSFAT.LSNIFV.GKGNK..ISLP.G.KGI.LT...ER..RLAA....G | |
Retrocopy | HP*SFDVVHVKDANGNSFATWLSNIFVTGKGNKPLISLP*G<KGICLTLLRER-QRLAANTAVG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .06 RPM | 58 .39 RPM |
SRP007412_cerebellum | 0 .00 RPM | 73 .08 RPM |
SRP007412_heart | 0 .03 RPM | 87 .60 RPM |
SRP007412_kidney | 0 .07 RPM | 131 .16 RPM |
SRP007412_liver | 0 .03 RPM | 137 .65 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_4051 |
Macaca mulatta | retro_mmul_2338 |