Parental gene: | LDHB, ENSOGAG00000004763 |
| Aliases: | None |
| Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
| Organism: | Bushbaby (Otolemur garnettii) |
| Coordinates: | GL873576.1:1731078..1749855(-) |
>ENSOGAG00000004763
ATGGCAACTCTTAAGGAAAAACTCATTGCACCAGTTGCAAAAGAAGAAGCGGCGGTCCCAAACAATAAGATCACGATAGT
GGGCGTTGGACAAGTTGGCATGGCATGTGCTATCAGCATTCTGGGAAAGTCTCTGGCTGATGAACTTGCTCTTGTGGATG
TTCTGGAAGATAAGCTTCAAGGAGAAATGATGGATCTGCAGCATGGGAGCTTATTTCTTCAGACACCTAAAATTGTGGCA
GATAAAGATTACTCTGTGACTGCCAATTCTAAGATCGTGGTGGTAACTGCAGGCGTCCGTCAGCAAGAGGGGGAGAGTCG
TCTCAATCTGGTGCAGAGAAATGTTAACGTCTTCAAGTTCATTATTCCTCAGATCGTCAAGTACAGTCCTGATTGCATCA
TAATTGTGGTTTCCAATCCAGTGGACATTCTTACATATGTTACCTGGAAACTAAGTGGATTACCCAAACACCGTGTGATT
GGAAGTGGGTGCAACCTGGATTCTGCTAGATTTCGCTATCTTATGGCTGAAAAGCTTGGCATTCATCCCAGCAGCTGCCA
CGGATGGATTTTGGGAGAACATGGCGACTCAAGTGTGGCTGTGTGGAGTGGAGTAAATGTGGCCGGTGTTTCTCTCCAGG
AATTGAATCCAGAAATGGGAACAGACAATGATAGTGAAAATTGGAAAGAAGTGCATAAGATGGTGGTTGAGAGTGCCTAT
GAAGTCATCAAGCTAAAAGGATATACTAATTGGGCAATTGGATTAAGTGTAGCTGATCTTATTGAATCCATGCTGAAAAA
TCTATCTAGGATTCACCCAGTATCAACAATGGTGAAGGGGATGTACGGTATTGAGAATGAAGTCTTCCTGAGCCTGCCGT
GTATCCTCAATACTCGGGGATTAACTAGCGTCATCAACCAGAAACTAAAGGATGAAGAGGTTGCTCAGCTCAAGAAAAGT
GCAGATACCCTGTGGGACATCCAAAAGGACCTGAAAGACCTGTGA
ATGGCAACTCTTAAGGAAAAACTCATTGCACCAGTTGCAAAAGAAGAAGCGGCGGTCCCAAACAATAAGATCACGATAGT
GGGCGTTGGACAAGTTGGCATGGCATGTGCTATCAGCATTCTGGGAAAGTCTCTGGCTGATGAACTTGCTCTTGTGGATG
TTCTGGAAGATAAGCTTCAAGGAGAAATGATGGATCTGCAGCATGGGAGCTTATTTCTTCAGACACCTAAAATTGTGGCA
GATAAAGATTACTCTGTGACTGCCAATTCTAAGATCGTGGTGGTAACTGCAGGCGTCCGTCAGCAAGAGGGGGAGAGTCG
TCTCAATCTGGTGCAGAGAAATGTTAACGTCTTCAAGTTCATTATTCCTCAGATCGTCAAGTACAGTCCTGATTGCATCA
TAATTGTGGTTTCCAATCCAGTGGACATTCTTACATATGTTACCTGGAAACTAAGTGGATTACCCAAACACCGTGTGATT
GGAAGTGGGTGCAACCTGGATTCTGCTAGATTTCGCTATCTTATGGCTGAAAAGCTTGGCATTCATCCCAGCAGCTGCCA
CGGATGGATTTTGGGAGAACATGGCGACTCAAGTGTGGCTGTGTGGAGTGGAGTAAATGTGGCCGGTGTTTCTCTCCAGG
AATTGAATCCAGAAATGGGAACAGACAATGATAGTGAAAATTGGAAAGAAGTGCATAAGATGGTGGTTGAGAGTGCCTAT
GAAGTCATCAAGCTAAAAGGATATACTAATTGGGCAATTGGATTAAGTGTAGCTGATCTTATTGAATCCATGCTGAAAAA
TCTATCTAGGATTCACCCAGTATCAACAATGGTGAAGGGGATGTACGGTATTGAGAATGAAGTCTTCCTGAGCCTGCCGT
GTATCCTCAATACTCGGGGATTAACTAGCGTCATCAACCAGAAACTAAAGGATGAAGAGGTTGCTCAGCTCAAGAAAAGT
GCAGATACCCTGTGGGACATCCAAAAGGACCTGAAAGACCTGTGA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016175 | ortholog_one2many | 4 retrogenes | |
| Canis familiaris | ENSCAFG00000012195 | possible_ortholog | 9 retrogenes | |
| Cavia porcellus | ENSCPOG00000007138 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000013620 | ortholog_one2one | 4 retrogenes | |
| Felis catus | ENSFCAG00000012639 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000015758 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000000972 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000004825 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000017183 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000012155 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002679 | possible_ortholog | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000017786 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000000172 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000030246 | ortholog_one2one | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009261 | within_species_paralog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000002462 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013000 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000000576 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ogar_689 | 96.08 | 99.10 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ogar_721 | 92.58 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ogar_1469 | 90.53 | 56.29 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ogar_2093 | 90.27 | 76.65 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ogar_2344 | 91.34 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ogar_2459 | 93.77 | 86.23 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ogar_3288 | 82.96 | 66.47 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ogar_3342 | 96.11 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ogar_3383 | 92.56 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSOGAG00000004763 retrocopies