RetrogeneDB ID: | retro_ogar_1469 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873548.1:667892..668454(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000026438 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSOGAG00000004763 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 90.53 % |
Parental protein coverage: | 56.29 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | VTWKL-SGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGV-NVAGVSLQE |
..WKL.SGLPKH.VIGSGCN.D.ARF.Y..AEKLGIHPSSCH.WILGEHGDSSVAVWSG..NVAGVSLQE | |
Retrocopy | IQWKL<SGLPKHCVIGSGCNPDFARFCYHIAEKLGIHPSSCHRWILGEHGDSSVAVWSGE<NVAGVSLQE |
Parental | LNPEMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTMVKGMYGI |
LNPEMGTDNDSENWKEV.KMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVST.VKGMYGI | |
Retrocopy | LNPEMGTDNDSENWKEVYKMVVESAYEVIKLKGYTNWAIGLSVADLIESMLKNLSRIHPVSTVVKGMYGI |
Parental | ENEVFLSLPCILNTRGLTSVINQKLKDEEVAQLKKSADTLWDIQKDLKDL |
ENEVFLSLPCIL.TR.LTSVINQKLK.EEVAQLKKS.DTLWDIQKDLKDL | |
Retrocopy | ENEVFLSLPCILSTRELTSVINQKLKGEEVAQLKKSTDTLWDIQKDLKDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |