Parental gene:

Ldhb, ENSMUSG00000030246

Aliases:Ldhb, AI790582, H-Ldh, LDH-B, LDH-H, Ldh-2, Ldh2
Description:lactate dehydrogenase B [Source:MGI Symbol;Acc:MGI:96763]
Organism:Mouse (Mus musculus)
Coordinates:6:142490248..142507957(-)


>ENSMUSG00000030246
ATGGCAACCCTTAAGGAGAAGCTCATTGCGTCCGTTGCAGATGATGAGGCTGCCGTCCCGAACAACAAGATCACTGTAGT
GGGCGTTGGACAAGTGGGTATGGCATGTGCCATCAGCATTCTGGGAAAGTCTCTGGCTGATGAACTTGCCCTGGTGGATG
TGTTGGAAGACAAGCTCAAAGGAGAGATGATGGACCTGCAGCACGGGAGCTTGTTCCTCCAGACTCCGAAAATTGTGGCC
GATAAAGATTACTCTGTGACAGCCAACTCTAAGATTGTGGTGGTGACGGCAGGAGTCCGCCAGCAGGAGGGGGAGAGTCG
GCTCAACCTGGTGCAGAGAAATGTCAACGTGTTCAAGTTCATCATTCCTCAGATCGTCAAGTACAGCCCTGACTGCACCA
TCATCGTGGTTTCCAACCCAGTGGATATTCTGACTTACGTCACCTGGAAACTGAGCGGGCTACCTAAGCACCGTGTGATT
GGAAGCGGATGCAATCTGGATTCTGCTCGATTCCGCTACCTCATGGCAGAGAAGCTTGGCATTCATCCCAGCAGCTGCCA
CGGATGGATCCTGGGCGAGCATGGAGACTCCAGTGTGGCTGTGTGGAGCGGGGTGAATGTGGCAGGAGTCTCCCTCCAGG
AACTGAATCCAGAAATGGGGACAGACAATGACAGTGAGAACTGGAAGGAGGTGCATAAGATGGTGGTGGACAGTGCCTAT
GAAGTCATCAAGCTCAAAGGCTACACCAACTGGGCCATCGGCCTGAGCGTGGCTGACCTCATCGAGTCCATGCTGAAAAA
CCTCTCCCGGATTCACCCCGTGTCTACCATGGTGAAGGGAATGTACGGCATTGAGAATGAAGTCTTCCTCAGTCTCCCGT
GCATCCTCAATGCTCGGGGGCTGACCAGCGTCATCAATCAGAAGCTGAAGGACGATGAGGTCGCTCAGCTCAGGAAGAGT
GCGGACACCCTGTGGGACATCCAGAAAGACCTCAAAGACCTGTGA

Library Parental gene expression (RPM)
SRP007412_brain 323 .16 RPM
SRP007412_cerebellum 420 .62 RPM
SRP007412_heart 1199 .98 RPM
SRP007412_kidney 997 .84 RPM
SRP007412_liver 2 .65 RPM
SRP007412_testis 63 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016175 possible_ortholog 4 retrogenes
retro_amel_1316, retro_amel_814, retro_amel_882, retro_amel_977,
Canis familiaris ENSCAFG00000012195 possible_ortholog 9 retrogenes
retro_cfam_1068, retro_cfam_111, retro_cfam_1674, retro_cfam_17, retro_cfam_1700, retro_cfam_174, retro_cfam_1836, retro_cfam_701, retro_cfam_93,
Cavia porcellus ENSCPOG00000007138 possible_ortholog 1 retrogene
retro_cpor_762,
Dasypus novemcinctus ENSDNOG00000013620 ortholog_one2one 4 retrogenes
retro_dnov_1161, retro_dnov_1511, retro_dnov_1570, retro_dnov_529,
Felis catus ENSFCAG00000012639 ortholog_one2one 1 retrogene
retro_fcat_462,
Gorilla gorilla ENSGGOG00000015758 ortholog_one2one 1 retrogene
retro_ggor_3033,
Loxodonta africana ENSLAFG00000000972 ortholog_one2one 2 retrogenes
retro_lafr_197, retro_lafr_315,
Macropus eugenii ENSMEUG00000004825 ortholog_one2one 1 retrogene
retro_meug_311,
Microcebus murinus ENSMICG00000017183 ortholog_one2one 2 retrogenes
retro_mmur_275, retro_mmur_300,
Myotis lucifugus ENSMLUG00000012155 possible_ortholog 1 retrogene
retro_mluc_202,
Macaca mulatta ENSMMUG00000002679 possible_ortholog 4 retrogenes
retro_mmul_212, retro_mmul_303, retro_mmul_308, retro_mmul_315,
Monodelphis domestica ENSMODG00000017786 ortholog_one2one 1 retrogene
retro_mdom_1484,
Mus musculus ENSMUSG00000043262 within_species_paralog 1 retrogene
retro_mmus_907,
Mus musculus ENSMUSG00000063229 within_species_paralog 14 retrogenes
retro_mmus_1044, retro_mmus_1300, retro_mmus_1514, retro_mmus_1608, retro_mmus_1753, retro_mmus_1887, retro_mmus_1889, retro_mmus_1925, retro_mmus_2078, retro_mmus_2592, retro_mmus_2885, retro_mmus_3150, retro_mmus_3694, retro_mmus_497,
Otolemur garnettii ENSOGAG00000004763 ortholog_one2one 9 retrogenes
retro_ogar_1469, retro_ogar_2093, retro_ogar_2344, retro_ogar_2459, retro_ogar_3288, retro_ogar_3342, retro_ogar_3383, retro_ogar_689, retro_ogar_721,
Pteropus vampyrus ENSPVAG00000002462 ortholog_one2one 3 retrogenes
retro_pvam_1487, retro_pvam_320, retro_pvam_673,
Rattus norvegicus ENSRNOG00000013000 ortholog_one2one 3 retrogenes
retro_rnor_2697, retro_rnor_2749, retro_rnor_2834,
Sus scrofa ENSSSCG00000000576 possible_ortholog 1 retrogene
retro_sscr_37,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_335 54.01 93.41
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2. retro_mmus_1817 98.50 100.00
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3. retro_mmus_2035 66.96 68.26
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4. retro_mmus_2509 73.56 77.25
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Download FASTA sequences of all ENSMUSG00000030246 retrocopies