Parental gene: | LDHB, ENSDNOG00000013620 |
| Aliases: | None |
| Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
| Organism: | Armadillo (Dasypus novemcinctus) |
| Coordinates: | GeneScaffold_24:200323..214426(-) |
>ENSDNOG00000013620
TCTCTGACTGATGAACTTGCCCTTGTGGATGTTTTGGAAGATAAACTCAAAGGAGAAATGATGGATCTGCAGCATGGAAG
CTTATTTCTTCAGACTCCTAAAATTGTGGCAGATAAAGACTACTCTGTGACTGCCAACTCCAAGGTGGTGGTGGTGACTG
CAGGAGTGCGGCAGCAGGAGGGCGAGAGCCGCCTCAACCTCGTCCAGAGGAACGTTAACGTCTTCAAGTTCATCATCCCG
CAGATCATCAAGTACAGTCCCGACTGCATCATCATTGTGGTGTCCAACCCAGTGGATATTCTAACATATGTTACCTGGAA
ATTAAGTGGATTACCCAAGCACCGTGTGTTTGGAAGTGGGTGCAATCTGGATTCTGCTAGATTTCGCTATCTTATGGCTG
AAAAACTTGGCGTTCATCCCACCAGCTGCCATGGATGGATTTTGGGAGAACATGGCGACTCAAGTGTGGCTGTGTGGAGT
GGAGTGAATGTGGCAGGAGTTTCTCTTCAGGAACTGAATCCAGATATGGGAACGGACAATGACAGTGAAAATTGGAAGGA
AGTACATAAGATGGTGGTTGAAAGTGCCTATGAAGTCATCAAGCTAAAAGGATATACCAACTGGGCTATTGGATTAAGTG
TGGCTGATCTGATTGAATCCCTCTTCAAAAATCTATCCAGGATTCACCCAGTGTCAACAATGGTGAAGGGGATGTATGGC
ATCGAGAACGAAGTCTTCTTGAGCCTTCCGTGTATCCTGAACGCTCGGGGACTGACCAGTGTTATCAACCAGAAGTTGAA
GGATGACGAAGTCGCTCAGCTCAAGAAGAGTGCGGATACCCTCTGGGATATCCAGAAGGACCTAAAAGACCTGTGA
TCTCTGACTGATGAACTTGCCCTTGTGGATGTTTTGGAAGATAAACTCAAAGGAGAAATGATGGATCTGCAGCATGGAAG
CTTATTTCTTCAGACTCCTAAAATTGTGGCAGATAAAGACTACTCTGTGACTGCCAACTCCAAGGTGGTGGTGGTGACTG
CAGGAGTGCGGCAGCAGGAGGGCGAGAGCCGCCTCAACCTCGTCCAGAGGAACGTTAACGTCTTCAAGTTCATCATCCCG
CAGATCATCAAGTACAGTCCCGACTGCATCATCATTGTGGTGTCCAACCCAGTGGATATTCTAACATATGTTACCTGGAA
ATTAAGTGGATTACCCAAGCACCGTGTGTTTGGAAGTGGGTGCAATCTGGATTCTGCTAGATTTCGCTATCTTATGGCTG
AAAAACTTGGCGTTCATCCCACCAGCTGCCATGGATGGATTTTGGGAGAACATGGCGACTCAAGTGTGGCTGTGTGGAGT
GGAGTGAATGTGGCAGGAGTTTCTCTTCAGGAACTGAATCCAGATATGGGAACGGACAATGACAGTGAAAATTGGAAGGA
AGTACATAAGATGGTGGTTGAAAGTGCCTATGAAGTCATCAAGCTAAAAGGATATACCAACTGGGCTATTGGATTAAGTG
TGGCTGATCTGATTGAATCCCTCTTCAAAAATCTATCCAGGATTCACCCAGTGTCAACAATGGTGAAGGGGATGTATGGC
ATCGAGAACGAAGTCTTCTTGAGCCTTCCGTGTATCCTGAACGCTCGGGGACTGACCAGTGTTATCAACCAGAAGTTGAA
GGATGACGAAGTCGCTCAGCTCAAGAAGAGTGCGGATACCCTCTGGGATATCCAGAAGGACCTAAAAGACCTGTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012922_ascending_colon | 299 .29 RPM |
| SRP012922_cerebellum | 408 .56 RPM |
| SRP012922_heart | 1695 .69 RPM |
| SRP012922_kidney | 900 .24 RPM |
| SRP012922_liver | 13 .47 RPM |
| SRP012922_lung | 184 .19 RPM |
| SRP012922_quadricep_muscle | 987 .97 RPM |
| SRP012922_spleen | 156 .93 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000016175 | ortholog_one2many | 4 retrogenes | |
| Canis familiaris | ENSCAFG00000012195 | possible_ortholog | 9 retrogenes | |
| Cavia porcellus | ENSCPOG00000007138 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000018915 | within_species_paralog | 11 retrogenes | |
| Felis catus | ENSFCAG00000012639 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000015758 | ortholog_one2one | 1 retrogene | |
| Loxodonta africana | ENSLAFG00000000972 | ortholog_one2one | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000004825 | ortholog_one2one | 1 retrogene | |
| Microcebus murinus | ENSMICG00000017183 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000012155 | possible_ortholog | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000002679 | possible_ortholog | 4 retrogenes | |
| Monodelphis domestica | ENSMODG00000017786 | ortholog_one2one | 1 retrogene | |
| Mustela putorius furo | ENSMPUG00000000172 | ortholog_one2one | 5 retrogenes | |
| Mus musculus | ENSMUSG00000030246 | ortholog_one2one | 4 retrogenes | |
| Otolemur garnettii | ENSOGAG00000004763 | ortholog_one2one | 9 retrogenes | |
| Pteropus vampyrus | ENSPVAG00000002462 | ortholog_one2one | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013000 | ortholog_one2one | 3 retrogenes | |
| Sus scrofa | ENSSSCG00000000576 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_dnov_529 | 76.97 | 52.23 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_dnov_1161 | 78.86 | 84.54 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_dnov_1511 | 66.43 | 97.25 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_dnov_1570 | 70.22 | 76.63 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSDNOG00000013620 retrocopies