RetrogeneDB ID: | retro_dnov_1570 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_23638:9154..9829(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSDNOG00000013620 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 70.22 % |
Parental protein coverage: | 76.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LTDELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKVVVVTAGVRQQEGESRLNLVQRN |
.TDELALVDV..DKL.G.MMDLQHG.L.L.TPKIV..K.Y.VTANS..V.VT.G.RQQEGES.LNLVQ.N | |
Retrocopy | MTDELALVDVIGDKL*GGMMDLQHGILLLRTPKIVSGKGYTVTANSNLVIVTTGARQQEGESHLNLVQCN |
Parental | VNVFKFIIPQIIKYSPDCIIIVVSNPVDILTYVTWKLSGLPKHR--VFGSGCNLDSARFRYLMAEKLGVH |
VN.FKFI.P.I.KYS.......VSNPV.ILTY.TWKL.G.P.....V.GSGCNLDS..F.YL....LGVH | |
Retrocopy | VNIFKFILPNIVKYSLNYKLFAVSNPVNILTYMTWKLRGFPXXXPCVTGSGCNLDSPQFHYLTGDRLGVH |
Parental | PTSCHGWILGEHGDSSVAVWSGVNVAGVSLQELNPDMGTDNDSENWKEVHKMVVESAYEVIKLKGYTNWA |
P.SCHG..LGEHGDSSV.VWSGVNVAGVSL..L.PD.GTD.D.E.WKEVHK.VV.SAYEVIKLKGYT.WA | |
Retrocopy | PSSCHG*VLGEHGDSSVPVWSGVNVAGVSLKNLHPDLGTDVDKEQWKEVHKQVVDSAYEVIKLKGYTSWA |
Parental | IGLSVADLIESLFKN |
.GLSVADL.E....N | |
Retrocopy | TGLSVADLEEGIMNN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 299 .29 RPM |
SRP012922_cerebellum | 0 .14 RPM | 408 .56 RPM |
SRP012922_heart | 0 .00 RPM | 1695 .69 RPM |
SRP012922_kidney | 0 .00 RPM | 900 .24 RPM |
SRP012922_liver | 0 .00 RPM | 13 .47 RPM |
SRP012922_lung | 0 .00 RPM | 184 .19 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 987 .97 RPM |
SRP012922_spleen | 0 .00 RPM | 156 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016175 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Cavia porcellus | ENSCPOG00000007138 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013620 | 4 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000018915 | 11 retrocopies | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015758 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000000972 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004825 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017183 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017786 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000000172 | 5 retrocopies | |
Mus musculus | ENSMUSG00000030246 | 4 retrocopies | |
Otolemur garnettii | ENSOGAG00000004763 | 9 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002462 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000013000 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000000576 | 1 retrocopy |