Parental gene:

RPL23, ENSSTOG00000014279

Aliases:None
Description:ribosomal protein L23 [Source:HGNC Symbol;Acc:10316]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393300.1:14240662..14245200(-)


>ENSSTOG00000014279
ATGTCGAAGCGAGGACGTGGTGGATCCTCCGGTGCGAAATTCCGGATTTCCTTGGGTCTTCCGGTAGGAGCCGTGATCAA
TTGTGCTGACAACACAGGAGCCAAAAATTTGTATATCATCTCTGTAAAGGGAATCAAGGGACGGCTGAACAGACTTCCTG
CTGCTGGCGTGGGTGACATGGTGATGGCCACGGTCAAGAAGGGCAAACCAGAGCTCAGAAAAAAGGTGCATCCAGCAGTG
GTAATTCGACAACGAAAGTCATACCGGAGAAAAGATGGTGTGTTTCTTTATTTTGAAGATAATGCAGGGGTCATAGTAAA
CAATAAAGGCGAGATGAAAGGTTCTGCCATCACGGGACCAGTTGCAAAGGAGTGTGCAGACTTGTGGCCCAGGATTGCTT
CCAATGCGGGCAGCATTGCATGA

Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004268 possible_ortholog 6 retrogenes
retro_amel_1791, retro_amel_226, retro_amel_308, retro_amel_880, retro_amel_918, retro_amel_990,
Callithrix jacchus ENSCJAG00000008311 ortholog_one2one 9 retrogenes
retro_cjac_1129, retro_cjac_1483, retro_cjac_2283, retro_cjac_2598, retro_cjac_2639, retro_cjac_2772, retro_cjac_2885, retro_cjac_3128, retro_cjac_3831,
Dipodomys ordii ENSDORG00000001372 ortholog_one2one 3 retrogenes
retro_dord_366, retro_dord_475, retro_dord_530,
Felis catus ENSFCAG00000014502 ortholog_one2one 10 retrogenes
retro_fcat_1022, retro_fcat_1431, retro_fcat_1707, retro_fcat_1708, retro_fcat_1959, retro_fcat_242, retro_fcat_296, retro_fcat_716, retro_fcat_756, retro_fcat_859,
Homo sapiens ENSG00000125691 ortholog_one2one 9 retrogenes
retro_hsap_2211, retro_hsap_2213, retro_hsap_2522, retro_hsap_3581, retro_hsap_3708, retro_hsap_3710, retro_hsap_4042, retro_hsap_4106, retro_hsap_556,
Latimeria chalumnae ENSLACG00000004430 ortholog_many2many 1 retrogene
retro_lcha_16,
Macaca mulatta ENSMMUG00000004502 possible_ortholog 9 retrogenes
retro_mmul_1598, retro_mmul_1705, retro_mmul_1955, retro_mmul_2366, retro_mmul_2391, retro_mmul_384, retro_mmul_928, retro_mmul_930, retro_mmul_935,
Nomascus leucogenys ENSNLEG00000000642 possible_ortholog 7 retrogenes
retro_nleu_1506, retro_nleu_181, retro_nleu_2056, retro_nleu_2337, retro_nleu_2988, retro_nleu_574, retro_nleu_8,
Oryctolagus cuniculus ENSOCUG00000013915 ortholog_one2one 6 retrogenes
retro_ocun_1027, retro_ocun_1196, retro_ocun_1270, retro_ocun_1919, retro_ocun_251, retro_ocun_482,
Otolemur garnettii ENSOGAG00000012445 possible_ortholog 7 retrogenes
retro_ogar_1050, retro_ogar_1645, retro_ogar_1695, retro_ogar_2250, retro_ogar_277, retro_ogar_3145, retro_ogar_539,
Ochotona princeps ENSOPRG00000001957 possible_ortholog 10 retrogenes
retro_opri_1079, retro_opri_1216, retro_opri_137, retro_opri_14, retro_opri_178, retro_opri_202, retro_opri_224, retro_opri_481, retro_opri_639, retro_opri_684,
Pteropus vampyrus ENSPVAG00000002277 possible_ortholog 2 retrogenes
retro_pvam_488, retro_pvam_890,
Rattus norvegicus ENSRNOG00000004107 possible_ortholog 10 retrogenes
retro_rnor_1195, retro_rnor_1539, retro_rnor_1622, retro_rnor_2445, retro_rnor_2483, retro_rnor_2688, retro_rnor_2981, retro_rnor_347, retro_rnor_498, retro_rnor_941,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_122 96.43 100.00
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2. retro_itri_1577 80.17 80.71
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Download FASTA sequences of all ENSSTOG00000014279 retrocopies