RetrogeneDB ID: | retro_itri_122 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393429.1:3541270..3541693(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000019936 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL23 | ||
Ensembl ID: | ENSSTOG00000014279 | ||
Aliases: | None | ||
Description: | ribosomal protein L23 [Source:HGNC Symbol;Acc:10316] |
Percent Identity: | 96.43 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSKRGRGGSSGAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
MSKRGRGGSSGAKFRISLGL.VGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP | |
Retrocopy | MSKRGRGGSSGAKFRISLGLLVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKP |
Parental | ELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSIA |
ELRKKVHP.VVIRQRKSY.RKDGVFLYFEDNAGVIVNNKGEMKGSAI.GPVAKECADLWPR.ASNAGSIA | |
Retrocopy | ELRKKVHPTVVIRQRKSYGRKDGVFLYFEDNAGVIVNNKGEMKGSAIMGPVAKECADLWPRVASNAGSIA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004268 | 6 retrocopies | |
Callithrix jacchus | ENSCJAG00000008311 | 9 retrocopies | |
Dipodomys ordii | ENSDORG00000001372 | 3 retrocopies | |
Felis catus | ENSFCAG00000014502 | 10 retrocopies | |
Homo sapiens | ENSG00000125691 | 9 retrocopies | |
Latimeria chalumnae | ENSLACG00000004430 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000004502 | 9 retrocopies | |
Nomascus leucogenys | ENSNLEG00000000642 | 7 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013915 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000012445 | 7 retrocopies | |
Ochotona princeps | ENSOPRG00000001957 | 10 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002277 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000004107 | 10 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000014279 | 2 retrocopies |
retro_itri_122 , retro_itri_1577,
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