RetrogeneDB ID: | retro_btau_1394 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 5:86949089..86949644(+) | ||
Located in intron of: | ENSBTAG00000022360 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.62437 | ||
Ensembl ID: | ENSBTAG00000002949 | ||
Aliases: | None | ||
Description: | chromobox protein homolog 1 [Source:RefSeq peptide;Acc:NP_001193344] |
Percent Identity: | 98.38 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS | |
Retrocopy | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
Parental | QKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN |
QKTAH.TDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN | |
Retrocopy | QKTAHGTDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN |
Parental | SDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKKDDKN |
SDEADLVPAKEANVKCPQVVISFYEERLT.HSYPSEDDDK.DDKN | |
Retrocopy | SDEADLVPAKEANVKCPQVVISFYEERLTCHSYPSEDDDKNDDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 0 .72 RPM |
ERP005899_muscle | 0 .00 RPM | 6 .18 RPM |
SRP017611_brain | 0 .05 RPM | 8 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .01 RPM |
SRP017611_liver | 0 .00 RPM | 2 .87 RPM |
SRP030211_testis | 0 .05 RPM | 20 .91 RPM |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
DN844729 | 86949090 | 86949375 | 97.9 | 279 | 6 | 273 |