RetrogeneDB ID: | retro_btau_1583 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 7:71621023..71621542(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000025109 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.62437 | ||
Ensembl ID: | ENSBTAG00000002949 | ||
Aliases: | None | ||
Description: | chromobox protein homolog 1 [Source:RefSeq peptide;Acc:NP_001193344] |
Percent Identity: | 79.89 % |
Parental protein coverage: | 95.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | KKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQK |
KKQNKKKVEEVLEEEE..YVVEKVLDR.VVKG.VEYLLKWK..SDEDNTWEP..NL........FLQSQK | |
Retrocopy | KKQNKKKVEEVLEEEE--YVVEKVLDRQVVKGQVEYLLKWKRVSDEDNTWEPGDNLTALTSLL-FLQSQK |
Parental | TAHETDKSEGGKRKADSDSEDKGEESKPKKKKE-ESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNS |
TA.ETDK..GGK.KADSDS...GEESKP.KKK..ESEK..GFA.GLEPE.IIG.TDSSGELMFLMKWKNS | |
Retrocopy | TAPETDKPDGGKCKADSDSDNMGEESKP-KKKK>ESEKSQGFAWGLEPEWIIGTTDSSGELMFLMKWKNS |
Parental | DEADLVPAKEANVKCPQVVISFYEE-RLTWHSYPSEDDD |
DEADLVPAKEANVKCPQV.ISFYEE..L..HSYPSEDDD | |
Retrocopy | DEADLVPAKEANVKCPQVIISFYEE<MLRCHSYPSEDDD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 0 .72 RPM |
ERP005899_muscle | 0 .00 RPM | 6 .18 RPM |
SRP017611_brain | 0 .00 RPM | 8 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .01 RPM |
SRP017611_liver | 0 .00 RPM | 2 .87 RPM |
SRP030211_testis | 0 .05 RPM | 20 .91 RPM |