RetrogeneDB ID: | retro_ogar_1322 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873543.1:3795150..3795655(+) | ||
Located in intron of: | ENSOGAG00000001076 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSOGAG00000005658 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 76.74 % |
Parental protein coverage: | 81.73 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | EEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEEN-LDCPDLIAEFLQSQKTAHETDKSEGGK |
...EEYVVEK.....VVK.K.E..LK..G.SDEDNTWEP.EN..D.P.L.AEFLQSQKT.HETDKSEGGK | |
Retrocopy | KQKEEYVVEKLVNY*VVKDKKECPLK*EGYSDEDNTWEPGEN<RDGPYLTAEFLQSQKTVHETDKSEGGK |
Parental | RKADSD-SEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN |
.KADSD.SE..GEESKPKK..EESEKPRGFA.GLE.E.I.GATDS.GELMFLMKWKNS...DLVPAKE.N | |
Retrocopy | CKADSD<SEGEGEESKPKKE-EESEKPRGFAQGLELEQISGATDSNGELMFLMKWKNSHQVDLVPAKEIN |
Parental | VKCPQVVISFYEERLTWHSYPSEDDDKKDDKN |
VKCPQ.VISFY.ERLTWHSYPSEDDDKK.DKN | |
Retrocopy | VKCPQAVISFYVERLTWHSYPSEDDDKKYDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |