Parental gene: | BT.62437, ENSBTAG00000002949 |
| Aliases: | None |
| Description: | chromobox protein homolog 1 [Source:RefSeq peptide;Acc:NP_001193344] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 19:39032380..39051471(+) |
>ENSBTAG00000002949
ATGGGGAAAAAACAAAACAAGAAGAAAGTGGAGGAGGTGCTAGAAGAAGAGGAAGAAGAATATGTGGTGGAAAAAGTTCT
AGACCGTCGAGTGGTAAAGGGCAAAGTGGAGTATCTCCTAAAGTGGAAGGGGTTCTCAGATGAGGATAACACATGGGAAC
CAGAAGAGAACCTGGATTGCCCTGACCTCATTGCTGAGTTTCTGCAGTCACAGAAAACAGCACACGAGACAGATAAATCA
GAGGGAGGCAAACGCAAAGCTGATTCTGATTCGGAAGATAAGGGGGAGGAGAGCAAACCAAAGAAGAAGAAAGAAGAGTC
AGAAAAGCCACGAGGCTTTGCCCGGGGTTTGGAACCAGAGAGGATTATTGGAGCTACGGACTCCAGTGGAGAACTCATGT
TCCTAATGAAATGGAAGAACTCTGATGAGGCTGATCTGGTCCCTGCCAAGGAAGCCAATGTCAAGTGCCCGCAGGTTGTC
ATATCCTTCTATGAGGAAAGGCTGACGTGGCATTCTTACCCCTCAGAGGATGATGACAAAAAAGATGATAAGAATTAA
ATGGGGAAAAAACAAAACAAGAAGAAAGTGGAGGAGGTGCTAGAAGAAGAGGAAGAAGAATATGTGGTGGAAAAAGTTCT
AGACCGTCGAGTGGTAAAGGGCAAAGTGGAGTATCTCCTAAAGTGGAAGGGGTTCTCAGATGAGGATAACACATGGGAAC
CAGAAGAGAACCTGGATTGCCCTGACCTCATTGCTGAGTTTCTGCAGTCACAGAAAACAGCACACGAGACAGATAAATCA
GAGGGAGGCAAACGCAAAGCTGATTCTGATTCGGAAGATAAGGGGGAGGAGAGCAAACCAAAGAAGAAGAAAGAAGAGTC
AGAAAAGCCACGAGGCTTTGCCCGGGGTTTGGAACCAGAGAGGATTATTGGAGCTACGGACTCCAGTGGAGAACTCATGT
TCCTAATGAAATGGAAGAACTCTGATGAGGCTGATCTGGTCCCTGCCAAGGAAGCCAATGTCAAGTGCCCGCAGGTTGTC
ATATCCTTCTATGAGGAAAGGCTGACGTGGCATTCTTACCCCTCAGAGGATGATGACAAAAAAGATGATAAGAATTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 8 .72 RPM |
| SRP017611_kidney | 9 .01 RPM |
| SRP017611_liver | 2 .87 RPM |
| ERP005899_muscle | 6 .18 RPM |
| ERP005899_liver | 0 .72 RPM |
| SRP030211_testis | 20 .91 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004890 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000007532 | possible_ortholog | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000000716 | ortholog_one2one | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000004874 | ortholog_one2one | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000000203 | ortholog_one2one | 7 retrogenes | |
| Felis catus | ENSFCAG00000006056 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000005030 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000018666 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000008021 | ortholog_one2many | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000005658 | ortholog_one2one | 9 retrogenes | |
| Ochotona princeps | ENSOPRG00000003699 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008891 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008689 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008192 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000023986 | ortholog_one2one | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000004769 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_148 | 66.10 | 95.68 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_btau_550 | 61.17 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_btau_558 | 91.76 | 97.30 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_btau_714 | 91.40 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_btau_807 | 97.84 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_btau_1121 | 98.92 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_btau_1394 | 98.38 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_btau_1583 | 79.89 | 95.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_btau_1615 | 100.00 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000002949 retrocopies