RetrogeneDB ID: | retro_rnor_2841 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:106916812..106917302(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cbx1 | ||
Ensembl ID: | ENSRNOG00000008689 | ||
Aliases: | None | ||
Description: | Protein Cbx1; RCG35120, isoform CRA_a [Source:UniProtKB/TrEMBL;Acc:D4A3T3] |
Percent Identity: | 80.12 % |
Parental protein coverage: | 89.19 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | YVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKSDGGKRKADSD |
.VVEKVL...VVK.KV.YLLKWKGFSDEDNTWEPE.N.DCPDL.AEFLQSQKT.HETDKS.GGK.KADSD | |
Retrocopy | FVVEKVLNW*VVKDKVGYLLKWKGFSDEDNTWEPEDNVDCPDLVAEFLQSQKTVHETDKSEGGKHKADSD |
Parental | SEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVV |
SEDKGEES.P..KKEE.EK.RGFA.GLEPE.I.GA..SSGE.MFLMKWK.SDEADLV..KEANVKCPQVV | |
Retrocopy | SEDKGEESEP-NKKEE*EKARGFAWGLEPEQIFGAV-SSGEFMFLMKWKTSDEADLVTTKEANVKCPQVV |
Parental | ISFYEERLTWHSYPSEDDD-KKDDKN |
ISF.EERL..HSY.SE.DD.KKD.KN | |
Retrocopy | ISFCEERLRGHSYLSEEDD>KKDKKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .12 RPM |
SRP017611_liver | 0 .00 RPM | 11 .97 RPM |