RetrogeneDB ID: | retro_ogar_1092 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873535.1:13634209..13634727(-) | ||
Located in intron of: | ENSOGAG00000016060 | ||
Retrocopyinformation | Ensembl ID: | ENSOGAG00000034109 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSOGAG00000005658 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 87.36 % |
Parental protein coverage: | 83.17 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | SVTLYIRKL-AGTMGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEEN |
S.T.Y.RKL.AGTMGKKQNKKKVEEVLEEEEEEYVVEKVLD.RVVKG.VEYLLKWKGFSDEDNTWEPEEN | |
Retrocopy | SITVYTRKL<AGTMGKKQNKKKVEEVLEEEEEEYVVEKVLDHRVVKGQVEYLLKWKGFSDEDNTWEPEEN |
Parental | LDCPDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATD |
LDCPDL.AEFLQ.QKTAHETDKSEGGKRK.DSDSEDKGEESKPKKKKEESEK..GFA..LEPE.IIGATD | |
Retrocopy | LDCPDLTAEFLQVQKTAHETDKSEGGKRKTDSDSEDKGEESKPKKKKEESEKL*GFAWSLEPEQIIGATD |
Parental | SSGELMFLMKWKNSDEADLVPAKEANVKCPQVVI |
SSGELMFL.KWKNSDEA.LVPAKEANVK...... | |
Retrocopy | SSGELMFLIKWKNSDEANLVPAKEANVKACHILL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |