RetrogeneDB ID: | retro_eeur_228 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_214555:11340..11754(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSEEUG00000004874 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 67.83 % |
Parental protein coverage: | 77.3 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKK |
KVEY.LKWKGF.D.DNTWEPEENLDCP.LI..FL.SQK...E.D...G.KRK...DSE.....SK.KKK. | |
Retrocopy | KVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKEKD---GTKRKSLCDSES--DDSKSKKKS |
Parental | EESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYL |
....KPRGFARGL.PE.IIGAT.SS.ELMFLMK.K..DEADLV.AKE.N.KCPQ.VI.F.EERLTWHS.. | |
Retrocopy | DAADKPRGFARGLDPEGIIGATNSSRELMFLMK*KD*DEADLVLAKESNMKCPQIVIAFDEERLTWHSCP |
Parental | SED |
.E. | |
Retrocopy | EEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 8 .38 RPM | 21 .75 RPM |
SRP017611_kidney | 28 .13 RPM | 30 .94 RPM |
SRP017611_liver | 11 .58 RPM | 7 .72 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004890 | 2 retrocopies | |
Bos taurus | ENSBTAG00000002949 | 9 retrocopies | |
Callithrix jacchus | ENSCJAG00000007532 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000000716 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000004874 | 3 retrocopies |
retro_eeur_121, retro_eeur_228 , retro_eeur_396,
|
Echinops telfairi | ENSETEG00000000203 | 7 retrocopies | |
Felis catus | ENSFCAG00000006056 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005030 | 2 retrocopies | |
Mus musculus | ENSMUSG00000018666 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008021 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000005658 | 9 retrocopies | |
Ochotona princeps | ENSOPRG00000003699 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008891 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008689 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008192 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023986 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000004769 | 2 retrocopies |