RetrogeneDB ID: | retro_amel_1228 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL193069.1:1011300..1011671(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSAMEG00000004890 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 53.12 % |
Parental protein coverage: | 67.2 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | EEEEEYVVEKVLDRRVV-KGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAKFLQSQKTAHETDKSEGGK |
..EE.YVV.K....RV..KGKVEYLLKW.G.SD.D.TWEPEE.L.CPDL.AKFLQSQ.TA..T.K...GK | |
Retrocopy | QDEEGYVV*KFPKKRVE<KGKVEYLLKWRGSSDADDTWEPEEKLGCPDLTAKFLQSQITAYGTEKL*EGK |
Parental | RKADSDSEDKGEESKPKKKKEEVRGESEKPRGFARGLEPERIIGATDSSGELMFLMKW |
RK.DSDSE.KG.E.KPKKK...............R.LE...I.......G.....M.W | |
Retrocopy | RKIDSDSENKG-ENKPKKKSQKSHDALPRDWSWSRLLELQTI--CSR*NGKYLMRMTW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |