RetrogeneDB ID: | retro_rnor_2388 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:110898794..110899198(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cbx1 | ||
Ensembl ID: | ENSRNOG00000008689 | ||
Aliases: | None | ||
Description: | Protein Cbx1; RCG35120, isoform CRA_a [Source:UniProtKB/TrEMBL;Acc:D4A3T3] |
Percent Identity: | 56.12 % |
Parental protein coverage: | 74.05 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KQNKKKVEEVLEEEEEEYVVE-KVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEE-NLDCPDLIAEFLQSQ |
K.NK....EV...EEE...V..K.....VVK.K.EYLLK...FSDEDN.WEPEE.NLDCP.LIAE.L... | |
Retrocopy | KRNKTRKVEVVLKEEEKNYVV>KKVNWSVVKDKEEYLLK*TRFSDEDNAWEPEE>NLDCPELIAE-LLQL |
Parental | KTAHETDKSDGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN |
.T........GGK.....DSE..GE.SK.KK.KE.SE....FA.GL.PE.IIG.TDSS.ELMFLMK.K. | |
Retrocopy | LTKFIRQINPGGKH--NTDSENMGEKSKRKKIKEDSESLQRFAQGLVPEEIIGVTDSSEELMFLMK*KS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 12 .80 RPM |
SRP017611_kidney | 0 .00 RPM | 19 .12 RPM |
SRP017611_liver | 0 .00 RPM | 11 .97 RPM |