RetrogeneDB ID: | retro_mmus_3108 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 8:15877906..15878209(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Cbx1 | ||
Ensembl ID: | ENSMUSG00000018666 | ||
Aliases: | Cbx1, Cbx, Cbx-rs2, E430007M08Rik, HP1B, Hp1beta, M31, MOD1 | ||
Description: | chromobox 1 [Source:MGI Symbol;Acc:MGI:105369] |
Percent Identity: | 83.5 % |
Parental protein coverage: | 54.59 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | RKADSDSE-DKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEAN |
R.ADSDS..DKGEESKP.KKKEESEKPRGF.RGLEPE.IIGATDSS.ELMF..K.KNSDEADLVP.K.AN | |
Retrocopy | RQADSDSK<DKGEESKPTKKKEESEKPRGFSRGLEPEWIIGATDSSVELMFPIKCKNSDEADLVPTKQAN |
Parental | VKCPQVVISFYEERLTWHSYPSEDDD-KKDDKN |
VKCP..VISFYEERL.WHSYPSED.D.KKDDKN | |
Retrocopy | VKCP*AVISFYEERLVWHSYPSEDED>KKDDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 33 .71 RPM |
SRP007412_cerebellum | 0 .00 RPM | 47 .29 RPM |
SRP007412_heart | 0 .00 RPM | 27 .89 RPM |
SRP007412_kidney | 0 .00 RPM | 41 .46 RPM |
SRP007412_liver | 0 .00 RPM | 23 .89 RPM |
SRP007412_testis | 0 .00 RPM | 33 .21 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004890 | 2 retrocopies | |
Bos taurus | ENSBTAG00000002949 | 9 retrocopies | |
Callithrix jacchus | ENSCJAG00000007532 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000000716 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000004874 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000000203 | 7 retrocopies | |
Felis catus | ENSFCAG00000006056 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005030 | 2 retrocopies | |
Mus musculus | ENSMUSG00000009575 | 1 retrocopy | |
Mus musculus | ENSMUSG00000018666 | 1 retrocopy |
retro_mmus_3108 ,
|
Mus musculus | ENSMUSG00000029836 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008021 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000005658 | 9 retrocopies | |
Ochotona princeps | ENSOPRG00000003699 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008891 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008689 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008192 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023986 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000004769 | 2 retrocopies |