RetrogeneDB ID: | retro_tsyr_467 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_12295:296..700(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTSYG00000004769 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 94.16 % |
Parental protein coverage: | 80.47 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWK-GFSDEDNTWEPEENLDCPDLIAEFLQS |
GK..N.KKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKW..GFSDEDNTWEPEENLDCPDLIAEFLQS | |
Retrocopy | GKSKNRKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWR<GFSDEDNTWEPEENLDCPDLIAEFLQS |
Parental | QKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMK |
QKTAHETDKSEGGKRKADSDSEDKGEESKPKKK.EESEKP.GFARGLEPERIIGATDSSGELM.LMK | |
Retrocopy | QKTAHETDKSEGGKRKADSDSEDKGEESKPKKK-EESEKPQGFARGLEPERIIGATDSSGELMLLMK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000004890 | 2 retrocopies | |
Bos taurus | ENSBTAG00000002949 | 9 retrocopies | |
Callithrix jacchus | ENSCJAG00000007532 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000000716 | 2 retrocopies | |
Erinaceus europaeus | ENSEEUG00000004874 | 3 retrocopies | |
Echinops telfairi | ENSETEG00000000203 | 7 retrocopies | |
Felis catus | ENSFCAG00000006056 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000005030 | 2 retrocopies | |
Mus musculus | ENSMUSG00000018666 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000008021 | 3 retrocopies | |
Otolemur garnettii | ENSOGAG00000005658 | 9 retrocopies | |
Ochotona princeps | ENSOPRG00000003699 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008891 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000008689 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000008192 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000023986 | 3 retrocopies | |
Tarsius syrichta | ENSTSYG00000004769 | 2 retrocopies |
retro_tsyr_1672, retro_tsyr_467 ,
|
Tarsius syrichta | ENSTSYG00000008159 | 6 retrocopies |