Parental gene: | CBX1, ENSETEG00000000203 |
| Aliases: | None |
| Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
| Organism: | Lesser hedgehog tenrec (Echinops telfairi) |
| Coordinates: | GeneScaffold_1994:687..5494(-) |
>ENSETEG00000000203
ATGGGGAAAAAACAAAACAAGAAGAAAGTGGAAGAGGTGCTAGAAGAAGAGGAAGAGGAATATGTGGTGGAAAAAGTTCT
CGACCGCCGAGTAGTAAAGGGCAAAGTAGAATACCTCCTAAAGTGGAAGGGCTTCTCAGATGAGGACAACACGTGGGAGC
CTGAAGAGAACCTGGATTGTCCTGACCTTATTGCTGAGTTTCTGCAGTCACAGAAAACTGCGCATGAGACAGATAAGTCA
GAGGGAGGCAAGCGCAAAGCTGACTCTGACTCAGAAGATAAGGGGGAGGAGAGTAAACCAAAGAAGAAGAAAGAAGAGTC
GGAAAAGCCACGAGGCTTTGCCCGGGGTTTGGAGCCAGAGCGGATTATTGGAGCTACAGACTCCAGTGGAGAACTCATGT
TCCTGATGAAATGGAAAAATTCTGATGAGGCCGACCTAGTCCCTGCCAAGGAAGCCAATGTCAAGTGCCCACAGGTTGTC
ATATCCTTCTATGAGGAAAGGCTGACGTGGCATTCCTACCCCTCAGAGGATGATGACAAGAAAGATGACAAGAACTAA
ATGGGGAAAAAACAAAACAAGAAGAAAGTGGAAGAGGTGCTAGAAGAAGAGGAAGAGGAATATGTGGTGGAAAAAGTTCT
CGACCGCCGAGTAGTAAAGGGCAAAGTAGAATACCTCCTAAAGTGGAAGGGCTTCTCAGATGAGGACAACACGTGGGAGC
CTGAAGAGAACCTGGATTGTCCTGACCTTATTGCTGAGTTTCTGCAGTCACAGAAAACTGCGCATGAGACAGATAAGTCA
GAGGGAGGCAAGCGCAAAGCTGACTCTGACTCAGAAGATAAGGGGGAGGAGAGTAAACCAAAGAAGAAGAAAGAAGAGTC
GGAAAAGCCACGAGGCTTTGCCCGGGGTTTGGAGCCAGAGCGGATTATTGGAGCTACAGACTCCAGTGGAGAACTCATGT
TCCTGATGAAATGGAAAAATTCTGATGAGGCCGACCTAGTCCCTGCCAAGGAAGCCAATGTCAAGTGCCCACAGGTTGTC
ATATCCTTCTATGAGGAAAGGCTGACGTGGCATTCCTACCCCTCAGAGGATGATGACAAGAAAGATGACAAGAACTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000004890 | possible_ortholog | 2 retrogenes | |
| Bos taurus | ENSBTAG00000002949 | ortholog_one2one | 9 retrogenes | |
| Callithrix jacchus | ENSCJAG00000007532 | possible_ortholog | 2 retrogenes | |
| Dipodomys ordii | ENSDORG00000000716 | ortholog_one2one | 2 retrogenes | |
| Erinaceus europaeus | ENSEEUG00000004874 | ortholog_one2one | 3 retrogenes | |
| Echinops telfairi | ENSETEG00000001220 | within_species_paralog | 1 retrogene | |
| Felis catus | ENSFCAG00000006056 | possible_ortholog | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000005030 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000018666 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000008021 | ortholog_one2many | 3 retrogenes | |
| Otolemur garnettii | ENSOGAG00000005658 | ortholog_one2one | 9 retrogenes | |
| Ochotona princeps | ENSOPRG00000003699 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000008891 | possible_ortholog | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000008689 | ortholog_one2one | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008192 | ortholog_one2one | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000023986 | ortholog_one2one | 3 retrogenes | |
| Tarsius syrichta | ENSTSYG00000004769 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_etel_382 | 55.21 | 50.81 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_etel_932 | 72.07 | 60.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_etel_1083 | 86.70 | 99.46 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_etel_1572 | 71.35 | 95.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_etel_1577 | 65.17 | 95.68 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_etel_1611 | 71.84 | 94.05 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_etel_2165 | 59.09 | 94.59 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSETEG00000000203 retrocopies