RetrogeneDB ID: | retro_etel_1083 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_208402:675..1220(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSETEG00000006294 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSETEG00000000203 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 86.7 % |
Parental protein coverage: | 99.46 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | GKKQNKKKVEEVLEEEEEEYVVE-KVL-DRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQ |
GKKQNKKKV.EVLEEEEEEYVVE.KVL..RRVVKGKVEYLLKWKGFSDEDNTWEPEENL..P.LIAEFLQ | |
Retrocopy | GKKQNKKKVVEVLEEEEEEYVVE<KVL<GRRVVKGKVEYLLKWKGFSDEDNTWEPEENLNHPTLIAEFLQ |
Parental | SQKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKE-ESEKPRGFARGLEPERIIGATDSSGELMFLMKW |
SQKTA.ETDKSEGGKRKAD.DSEDKGEE.KPK.KKE.ESEKPRGFAR.L.PE..IG.TDSSGELM.LMKW | |
Retrocopy | SQKTAPETDKSEGGKRKADADSEDKGEECKPK-KKE<ESEKPRGFARRLKPEQMIGPTDSSGELMLLMKW |
Parental | KNSDEADLVPAKEANVKCP-QVVISFYEERLTWHSYPSEDDDKKDDKN |
.NSDEADLVPAKEANVKCP.QVVISF.EERLT.HS.PSED.DK.DDKN | |
Retrocopy | TNSDEADLVPAKEANVKCP<QVVISFCEERLTGHSHPSEDEDKQDDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |