RetrogeneDB ID: | retro_etel_2165 | ||
Retrocopylocation | Organism: | Lesser hedgehog tenrec (Echinops telfairi) | |
Coordinates: | scaffold_817:2..507(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSETEG00000000203 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 59.09 % |
Parental protein coverage: | 94.59 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KKQNKKKVEEVLEEEEEEYVVEK-VLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQ |
K......V..V.E.E....VVEK.VL.R.VV.GKV.Y.LKWKGF.D.DNTWEPEENLD.P.LI..F..SQ | |
Retrocopy | KETRMERVKIVEEAEPAASVVEK>VLHRCVVHGKVDYFLKWKGFTDADNTWEPEENLDGPELIEAFPNSQ |
Parental | KTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNS |
K...E.....G.KRK..SDS....E....K.KK......RGFARGL..ERI.GATDSSGE..FL...K.S | |
Retrocopy | KAGKE---KYGSKRKSLSDS----ESDDSKSKKRCC*QTRGFARGLGLERIPGATDSSGESLFLTT*KDS |
Parental | DEADLVPAKEANVKCPQVVISFYEERLTWHSYPSED |
DEADLV..KEAN.KCPQ.VI.FYEERLTWHS.P... | |
Retrocopy | DEADLVLTKEANMKCPQIVIAFYEERLTWHSCPEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |