RetrogeneDB ID: | retro_btau_807 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 2:366116..366671(+) | ||
Located in intron of: | ENSBTAG00000009831 | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000040536 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.62437 | ||
Ensembl ID: | ENSBTAG00000002949 | ||
Aliases: | None | ||
Description: | chromobox protein homolog 1 [Source:RefSeq peptide;Acc:NP_001193344] |
Percent Identity: | 97.84 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MGKKQNKKKVEEVLEE.EEEYVVEKVLDRRVVK.KVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS | |
Retrocopy | MGKKQNKKKVEEVLEEKEEEYVVEKVLDRRVVKAKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
Parental | QKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN |
QKTAHETDKSEGGKRKADSDSEDKGEE.KPKKKKEESEKPR.FARGLEPERIIGATDSSGELMFLMKWKN | |
Retrocopy | QKTAHETDKSEGGKRKADSDSEDKGEENKPKKKKEESEKPRSFARGLEPERIIGATDSSGELMFLMKWKN |
Parental | SDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKKDDKN |
SDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKKDDKN | |
Retrocopy | SDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKKDDKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 0 .72 RPM |
ERP005899_muscle | 0 .00 RPM | 6 .18 RPM |
SRP017611_brain | 0 .00 RPM | 8 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .01 RPM |
SRP017611_liver | 0 .00 RPM | 2 .87 RPM |
SRP030211_testis | 0 .05 RPM | 20 .91 RPM |