RetrogeneDB ID: | retro_btau_558 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 14:39523636..39524174(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000005559 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | BT.62437 | ||
Ensembl ID: | ENSBTAG00000002949 | ||
Aliases: | None | ||
Description: | chromobox protein homolog 1 [Source:RefSeq peptide;Acc:NP_001193344] |
Percent Identity: | 91.76 % |
Parental protein coverage: | 97.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | NKKKVEEVLEEEEEEYVVEK-VLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTA |
NKKKVEEVLEEEEEEYVV.K.VLD..VVKGKVEYLLKWKGFSDEDNTWEPEE.LDCPDLIAEFLQSQKTA | |
Retrocopy | NKKKVEEVLEEEEEEYVVGK<VLDH*VVKGKVEYLLKWKGFSDEDNTWEPEEKLDCPDLIAEFLQSQKTA |
Parental | HETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLM-KWKNSDE |
.ETDKSE.GKRKADSDSEDKGEESKPKKKKEESEKPRGFA.GLEPE.IIGA.DSSGELMFLM...KNSDE | |
Retrocopy | YETDKSEAGKRKADSDSEDKGEESKPKKKKEESEKPRGFAQGLEPEQIIGARDSSGELMFLM<DMKNSDE |
Parental | ADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKKDDKN |
ADLVPAKE.NVKCPQVVISFYEERLTWHSYPSEDDDKKDD.N | |
Retrocopy | ADLVPAKEPNVKCPQVVISFYEERLTWHSYPSEDDDKKDDRN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 0 .72 RPM |
ERP005899_muscle | 0 .00 RPM | 6 .18 RPM |
SRP017611_brain | 0 .00 RPM | 8 .72 RPM |
SRP017611_kidney | 0 .00 RPM | 9 .01 RPM |
SRP017611_liver | 0 .00 RPM | 2 .87 RPM |
SRP030211_testis | 0 .02 RPM | 20 .91 RPM |