Parental gene:

ENSCJAG00000007532

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:5:109483486..109515857(+)


>ENSCJAG00000007532
ATGGGGAAAAAACAAAACAAGAAGAAAGTCGAGGAGGTGCTAGAAGAGGAGGAAGAGGAATATGTGGTGGAAAAAGTTCT
CGACCGTCGAGTGGTAAAGGGCAAAGTGGAATACCTCCTAAAGTGGAAGGGGTTCTCAGATGAGGACAACACATGGGAGC
CAGAAGAGAATCTGGATTGCCCCGACCTCATTGCCGAGTTTCTGCAGTCACAGAAAACAGCACATGAGACAGATAAATCG
GAAGGAGGCAAGCGCAAAGCTGATTCTGATTCTGAAGATAAGGGAGAGGAGAGCAAACCAAAGAAGAAGAAAGAAGAGGT
ACGACTAGAATCAGAAAAGCCACGAGGCTTTGCTCGAGGTTTGGAGCCGGAGCGGATTATTGGAGCTACAGACTCCAGTG
GAGAGCTAATGTTCCTAATGAAATGGAAAAACTCTGATGAGGCTGACCTGGTCCCTGCCAAGGAAGCCAATGTCAAGTGC
CCACAGGTTGTCATATCCTTCTATGAGGAAAGGCTGACGTGGCATTCCTACCCCTCGGAGGATGATGACAAAAAAGATGA
CAAGAATTAA

Library Parental gene expression (RPM)
SRP051959_spleen 25 .11 RPM
SRP051959_skeletal_muscle 20 .59 RPM
SRP051959_lymph_node 23 .52 RPM
SRP051959_lung 23 .02 RPM
SRP051959_liver 12 .35 RPM
SRP051959_kidney 26 .29 RPM
SRP051959_heart 21 .71 RPM
SRP051959_colon 29 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004890 ortholog_one2many 2 retrogenes
retro_amel_1228, retro_amel_54,
Bos taurus ENSBTAG00000002949 possible_ortholog 9 retrogenes
retro_btau_1121, retro_btau_1394, retro_btau_148, retro_btau_1583, retro_btau_1615, retro_btau_550, retro_btau_558, retro_btau_714, retro_btau_807,
Canis familiaris ENSCAFG00000016832 ortholog_one2many 1 retrogene
retro_cfam_804,
Choloepus hoffmanni ENSCHOG00000011957 ortholog_one2many 2 retrogenes
retro_chof_1860, retro_chof_2185,
Callithrix jacchus ENSCJAG00000007952 within_species_paralog 8 retrogenes
retro_cjac_1100, retro_cjac_1414, retro_cjac_1612, retro_cjac_2405, retro_cjac_2623, retro_cjac_2728, retro_cjac_3322, retro_cjac_869,
Callithrix jacchus ENSCJAG00000018847 within_species_paralog 1 retrogene
retro_cjac_2020,
Dipodomys ordii ENSDORG00000000716 possible_ortholog 2 retrogenes
retro_dord_594, retro_dord_709,
Erinaceus europaeus ENSEEUG00000004874 possible_ortholog 3 retrogenes
retro_eeur_121, retro_eeur_228, retro_eeur_396,
Echinops telfairi ENSETEG00000000203 possible_ortholog 7 retrogenes
retro_etel_1083, retro_etel_1572, retro_etel_1577, retro_etel_1611, retro_etel_2165, retro_etel_382, retro_etel_932,
Felis catus ENSFCAG00000006056 ortholog_one2many 1 retrogene
retro_fcat_514,
Homo sapiens ENSG00000108468 ortholog_one2many 3 retrogenes
retro_hsap_4654, retro_hsap_4790, retro_hsap_4840,
Gorilla gorilla ENSGGOG00000024063 ortholog_one2many 3 retrogenes
retro_ggor_2887, retro_ggor_3019, retro_ggor_330,
Microcebus murinus ENSMICG00000009510 ortholog_one2many 4 retrogenes
retro_mmur_1324, retro_mmur_178, retro_mmur_467, retro_mmur_999,
Myotis lucifugus ENSMLUG00000005030 possible_ortholog 2 retrogenes
retro_mluc_1000, retro_mluc_1533,
Mustela putorius furo ENSMPUG00000015302 ortholog_one2many 1 retrogene
retro_mputfur_1457,
Mus musculus ENSMUSG00000018666 possible_ortholog 1 retrogene
retro_mmus_3108,
Nomascus leucogenys ENSNLEG00000002435 ortholog_one2many 4 retrogenes
retro_nleu_1089, retro_nleu_1105, retro_nleu_1955, retro_nleu_2961,
Oryctolagus cuniculus ENSOCUG00000008021 possible_ortholog 3 retrogenes
retro_ocun_177, retro_ocun_442, retro_ocun_55,
Otolemur garnettii ENSOGAG00000005658 possible_ortholog 9 retrogenes
retro_ogar_1087, retro_ogar_1092, retro_ogar_1322, retro_ogar_2056, retro_ogar_2396, retro_ogar_2443, retro_ogar_2840, retro_ogar_2880, retro_ogar_368,
Ochotona princeps ENSOPRG00000003699 possible_ortholog 1 retrogene
retro_opri_552,
Procavia capensis ENSPCAG00000002381 ortholog_one2many 2 retrogenes
retro_pcap_134, retro_pcap_308,
Pongo abelii ENSPPYG00000008891 ortholog_many2many 1 retrogene
retro_pabe_78,
Rattus norvegicus ENSRNOG00000008689 possible_ortholog 2 retrogenes
retro_rnor_2388, retro_rnor_2841,
Sarcophilus harrisii ENSSHAG00000008192 ortholog_one2many 1 retrogene
retro_shar_76,
Sus scrofa ENSSSCG00000017529 ortholog_one2many 1 retrogene
retro_sscr_635,
Ictidomys tridecemlineatus ENSSTOG00000023986 possible_ortholog 3 retrogenes
retro_itri_1282, retro_itri_1599, retro_itri_1867,
Tupaia belangeri ENSTBEG00000014931 ortholog_one2many 39 retrogenes
retro_tbel_1388, retro_tbel_1557, retro_tbel_1613, retro_tbel_1655, retro_tbel_1663, retro_tbel_1794, retro_tbel_2124, retro_tbel_2130, retro_tbel_2281, retro_tbel_2313, retro_tbel_2346, retro_tbel_2539, retro_tbel_2559, retro_tbel_2571, retro_tbel_2587, retro_tbel_270, retro_tbel_2713, retro_tbel_2716, retro_tbel_2752, retro_tbel_2809, retro_tbel_2835, retro_tbel_2854, retro_tbel_2926, retro_tbel_2993, retro_tbel_303, retro_tbel_3236, retro_tbel_3370, retro_tbel_3685, retro_tbel_3998, retro_tbel_4032, retro_tbel_4202, retro_tbel_4611, retro_tbel_4630, retro_tbel_484, retro_tbel_558, retro_tbel_687, retro_tbel_792, retro_tbel_793, retro_tbel_938,
Tarsius syrichta ENSTSYG00000004769 possible_ortholog 2 retrogenes
retro_tsyr_1672, retro_tsyr_467,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_51 90.00 79.37
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2. retro_cjac_191 95.77 100.00
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Download FASTA sequences of all ENSCJAG00000007532 retrocopies