RetrogeneDB ID: | retro_ogar_1087 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873535.1:4746642..4747060(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSOGAG00000005658 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 66.21 % |
Parental protein coverage: | 68.75 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | NKKKVEEVLEEEEEEYVVEK-VLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQSQKTA |
.K.KVEEVLEEEEEEY.VEK.VLD...VKG.VEYLL.WKGFSDE..TWEPE.....PDL.AE..QSQKT. | |
Retrocopy | DKEKVEEVLEEEEEEYLVEK<VLDCPIVKGNVEYLLQWKGFSDEACTWEPERIWIAPDLTAELMQSQKTV |
Parental | HETDKSEGGKRKADSDSEDKGEES-KPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKNSDE |
.ETDK.E..K.K.DS......EE..K..K.KE.SEKP..FA..LEP.RII.A..SSGE.MF.MKWKN.DE | |
Retrocopy | YETDK*EQQKHKFDS---EEEEET<KQTKEKEASEKP*AFALDLEPKRIIKAMGSSGEFMFWMKWKNCDE |
Parental | ADLVP |
ADLVP | |
Retrocopy | ADLVP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |