RetrogeneDB ID: | retro_cpor_1412 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_8:5087987..5088283(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSCPOG00000012397 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 58.65 % |
Parental protein coverage: | 51.55 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 4 |
Parental | STNISFTNMVSVDERLIYKPHPQ-DPEKTVLTQEAIISVKGVSLSSYLEGLMASTISSNANKGREAMEWV |
.TNI.FTN..SV.E.LI...HPQ..P.KT.L.QEAII.VKGVSL.SYL.GLMAST.......G..A...V | |
Retrocopy | ATNI*FTNTGSVEEGLIHQTHPQ<GPKKTILPQEAIITVKGVSLNSYLKGLMASTVPTSVIGGQKATIRV |
Parental | IHKLNAEIE-ELAAS-ARGSIRTPMAAA-AFVEK |
IHKLN...E.E.AAS..R.S.RTPM.A...F.EK | |
Retrocopy | IHKLNTKAE<ESAAS<TRESTRTPMRAT<GFAEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .17 RPM |
SRP017611_liver | 0 .00 RPM | 8 .31 RPM |
SRP040447_lung | 0 .00 RPM | 9 .86 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 13 .83 RPM |