RetrogeneDB ID:

retro_mmur_1400

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_53928:3585..4040(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:SLMO2
Ensembl ID:ENSMICG00000014902
Aliases:None
Description:slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892]


Retrocopy-Parental alignment summary:






>retro_mmur_1400
GGACTGCCTTCCATTGTGAAGTCTTTTACTGCAGCAAGAACCAAAACATATGTGCAAGAATATTCTGTAGTTGATCCTGT
AGAGAAAACAATGGAACTTAAATCTACTAATATTTCATTTACAAATATGGTTTCAGTAGATGAGAGACTTATATACAAAC
CACATCCCCAGGACTCACAAAAAACTATTTTGACTCAAGAAGCCATAGTCACTGTGAAAGGAGTCAGCCTTAGCAGTTAC
CTTGAAGGACTGATGACAAGTACCATATCTTCAAATGCTAATAAAGGCTGAGAAGCAATGGAATGGGTAATACATAAATT
AAATGCCGAGATTAAAGAACTGACGGCTTCAGCAAGAGGAAGCATAAGGACTCCAATGGCAGCAGCAGCGTTTGTAGAAA
AATGATAATACCAGTTGGTAGATAACGTTGGGTGCCCCAGGTCTCTCCAAGCTGG

ORF - retro_mmur_1400 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.91 %
Parental protein coverage: 71.9 %
Number of stop codons detected: 2
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTILTQEAI
GLPSIVKS...AARTKTYVQE.SVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQD..KTILTQEAI
RetrocopyGLPSIVKSFT-AARTKTYVQEYSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDSQKTILTQEAI
ParentalITVKGVSLSSYLEGLMASTISSNANKGREAMEWVIHKLNAEIEELTASARGSIRTPM-AAA-ACRKMIIP
.TVKGVSLSSYLEGLM.STISSNANKG.EAMEWVIHKLNAEI.ELTASARGSIRTPM.AAA..CRKMIIP
RetrocopyVTVKGVSLSSYLEGLMTSTISSNANKG*EAMEWVIHKLNAEIKELTASARGSIRTPMAAAA<VCRKMIIP
ParentalVGR-RWVPQVSPSW
VGR.RWVPQVSPSW
RetrocopyVGR*RWVPQVSPSW

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1400 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1400 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 26 parental genes, and 101 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000044023 retrocopies
Canis familiaris ENSCAFG000000122201 retrocopy
Callithrix jacchus ENSCJAG000000189054 retrocopies
Cavia porcellus ENSCPOG000000123974 retrocopies
Dasypus novemcinctus ENSDNOG000000145483 retrocopies
Equus caballus ENSECAG000000005131 retrocopy
Erinaceus europaeus ENSEEUG000000036974 retrocopies
Felis catus ENSFCAG000000314311 retrocopy
Homo sapiens ENSG000001011666 retrocopies
Gorilla gorilla ENSGGOG000000048035 retrocopies
Microcebus murinus ENSMICG00000014902 12 retrocopies
Myotis lucifugus ENSMLUG000000149072 retrocopies
Macaca mulatta ENSMMUG000000075604 retrocopies
Monodelphis domestica ENSMODG000000166085 retrocopies
Mustela putorius furoENSMPUG000000070751 retrocopy
Nomascus leucogenys ENSNLEG000000095793 retrocopies
Oryctolagus cuniculus ENSOCUG000000056218 retrocopies
Otolemur garnettii ENSOGAG0000001338210 retrocopies
Pongo abelii ENSPPYG000000111827 retrocopies
Pan troglodytes ENSPTRG000000136825 retrocopies
Pteropus vampyrus ENSPVAG000000052262 retrocopies
Sus scrofa ENSSSCG000000075253 retrocopies
Tupaia belangeri ENSTBEG000000004931 retrocopy
Tarsius syrichta ENSTSYG000000125332 retrocopies
Tursiops truncatus ENSTTRG000000084172 retrocopies
Vicugna pacos ENSVPAG000000010442 retrocopies



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