RetrogeneDB ID: | retro_pabe_1462 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 17:52502561..52502849(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSPPYG00000011182 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 83.67 % |
Parental protein coverage: | 55.49 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | SHRLLSTEWGL-PSIVKSLIGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDP |
S..LLSTE.GL..SIVKSLIGAARTKTYVQEH.VVD.VEKTMELKSTNISFTN..SVDERL..KPHP.D. | |
Retrocopy | SGSLLSTERGL<ASIVKSLIGAARTKTYVQEHFVVDHVEKTMELKSTNISFTNKFSVDERLTEKPHPRDT |
Parental | E-KTVLTQEAIITVKGVSLSSYLEGLMA |
E.KT.LTQEA.ITVKGVSLSSYLEGLMA | |
Retrocopy | E>KTILTQEAMITVKGVSLSSYLEGLMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .48 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .24 RPM |
SRP007412_heart | 0 .00 RPM | 5 .51 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .37 RPM |
SRP007412_liver | 0 .00 RPM | 5 .20 RPM |