RetrogeneDB ID: | retro_cpor_468 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_16:23904228..23904786(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSCPOG00000012397 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.11 % |
Parental protein coverage: | 95.36 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | FDHPWETVTTAAMQKYPNPMNPSVVGV--DVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSIIGAARTKTY |
FDH.WETVTTAA.QKYP.P..PS..G...DVLDR.I.PSGKLHS.RLL.T..GLPS.V.SII.AARTK.Y | |
Retrocopy | FDHLWETVTTAARQKYPDPVSPSMAGNGNDVLDRYI*PSGKLHSCRLLITH*GLPSTVNSIIAAARTKIY |
Parental | VQEHSVVDPVEKIMELKSTNISFTNMVSVDERL-IYKPHPQDPE-KTVLTQEAIISVKGVSLS-SYLEGL |
VQ.H...D..EK....KS.NIS..NM......L..YKPH..D.E.K.VLTQEAII..K.VSL..SYLEGL | |
Retrocopy | VQGHGAFDLEEKTIKPKSANISLMNMTFST*KL<TYKPHS*DAE<KIVLTQEAIITEKKVSLT<SYLEGL |
Parental | MASTISSNANKGREAMEWVIHKLNAEIEELAASARGSIRTPMAAAAFVEK |
MA..ISS..NK..EA.E.V.H.LNAE.EELA...R..IR.PM..AAF..K | |
Retrocopy | MARKISSDNNKEHEATERVTHELNAETEELAGFLREIIRAPMVVAAFAKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .17 RPM |
SRP017611_liver | 0 .00 RPM | 8 .31 RPM |
SRP040447_lung | 0 .00 RPM | 9 .86 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 13 .83 RPM |