RetrogeneDB ID: | retro_eeur_244 | ||
Retrocopylocation | Organism: | Hedgehog (Erinaceus europaeus) | |
Coordinates: | scaffold_221538:4532..4965(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSEEUG00000003697 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 79.19 % |
Parental protein coverage: | 94.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MKIWTSE-PVLS-HPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSI |
MKIWTS..P.L..H.WETVTTAA.QKYPNPMNPS....D.LDRH..PSGKLHSH.LLSTEW.LPS.VKS. | |
Retrocopy | MKIWTSQ>PFLTTHAWETVTTAAEQKYPNPMNPS----DILDRHTEPSGKLHSH*LLSTEWELPSTVKSL |
Parental | IGAARTKTYVQEHSVVDPVEKTMELKSTNISFTNMVSVDERLTYKPYPQDPEKTVLTQEAIITVKGVSLS |
IGAARTKTYVQEH...D.V.KTME.KSTNISFTNM.SVDERL.YKP.PQDPEKT.LTQ.A.ITVKGVSLS | |
Retrocopy | IGAARTKTYVQEHPIADLVQKTMEFKSTNISFTNMASVDERLIYKPHPQDPEKTILTQNATITVKGVSLS |
Parental | SYLEGLMAS |
S.LEGLMAS | |
Retrocopy | SSLEGLMAS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 4 .35 RPM |
SRP017611_kidney | 0 .00 RPM | 16 .13 RPM |
SRP017611_liver | 0 .00 RPM | 11 .09 RPM |