RetrogeneDB ID: | retro_pabe_371 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 1:29232679..29233120(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSPPYG00000011182 | ||
Aliases: | None | ||
Description: | slowmo homolog 2 (Drosophila) [Source:HGNC Symbol;Acc:15892] |
Percent Identity: | 79.47 % |
Parental protein coverage: | 86.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MQKYPNPMNPSVVGVDVLDRHIDPSGKLHSHRLLSTEWGLPSIVKSLIGAARTKTYVQEHSVVDPVEKTM |
MQKYPNPM.PSVVGV..LDRHIDPSGKLHSHRL.STE.GL.SIVKSLIGAARTKT.VQEHS.VDPVEK.M | |
Retrocopy | MQKYPNPMSPSVVGVNMLDRHIDPSGKLHSHRLPSTE*GLLSIVKSLIGAARTKTCVQEHS-VDPVEKAM |
Parental | ELKSTNISF-TNMVSVDERLIYKPHPQDPEK-TVLTQEAIITVKGVSLSSYLEGLMASTISSNASKGREA |
ELKSTNISF..NMVSVDER.I.K.....P...T.LTQ.A.IT.KGVSLS.YLEGLM.STISS.AS.G.EA | |
Retrocopy | ELKSTNISF<SNMVSVDERHI-KTTSSGPRR>TILTQKAVITMKGVSLSGYLEGLMVSTISSSASEGEEA |
Parental | MEWVIHKLNAE |
.EWVIHKLNAE | |
Retrocopy | VEWVIHKLNAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 3 .48 RPM |
SRP007412_cerebellum | 0 .00 RPM | 9 .24 RPM |
SRP007412_heart | 0 .00 RPM | 5 .51 RPM |
SRP007412_kidney | 0 .00 RPM | 5 .37 RPM |
SRP007412_liver | 0 .00 RPM | 5 .20 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_310 |
Pan troglodytes | retro_ptro_251 |
Macaca mulatta | retro_mmul_539 |