RetrogeneDB ID: | retro_ptro_252 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:199690588..199690987(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSPTRG00000013682 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.42 % |
Parental protein coverage: | 69.59 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | KIWTSEHVFDHPWETVTTAAMQKYPNPMNPSVVGVDVLDRHIDLSGKLHSHRLLSTEWGLPSIVKSLIGA |
KIWT..HVFDHP.ETVTTAAMQ.Y.N.M.PSVVGV.VLDRHIDLSGKL.SHRL.STE.GL.SIVKSLIGA | |
Retrocopy | KIWTLKHVFDHP*ETVTTAAMQTYSNSMSPSVVGVNVLDRHIDLSGKLYSHRLPSTE*GLLSIVKSLIGA |
Parental | ARTKTYV-QEHSVVDPVEKTMELKSTNISFTNMVSVDERLIYKPHPQDPEKTVLTQEAIIT-VKGVS |
ART...V...H..VDPVEK.ME.KS.N.S..NMVSVD.R....P..Q..E.......A..T.VKG.S | |
Retrocopy | ARTNKCV<ESH-FVDPVEKAMERKSSNFS*ANMVSVDARHLQPPR-QVSEGPI*SRLAVFT>VKGSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 13 .30 RPM |
SRP007412_cerebellum | 0 .00 RPM | 16 .92 RPM |
SRP007412_heart | 0 .00 RPM | 21 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 26 .73 RPM |
SRP007412_liver | 0 .00 RPM | 21 .93 RPM |
SRP007412_testis | 0 .00 RPM | 62 .39 RPM |