Parental gene:

SLMO2, ENSCPOG00000012397

Aliases:None
Description:None
Organism:Guinea Pig (Cavia porcellus)
Coordinates:scaffold_156:1302276..1311862(-)


>ENSCPOG00000012397
ATGAAGATCTGGACTTCGGAGCACGTATTTGACCACCCGTGGGAAACTGTTACCACGGCTGCAATGCAGAAATACCCAAA
CCCTATGAACCCGAGTGTGGTCGGAGTTGATGTGCTGGACAGACACATAGATCCCTCTGGAAAGCTGCATAGCCACAGAC
TTCTCAGCACGGAGTGGGGACTGCCTTCCATCGTGAAGTCCATTATTGGTGCAGCAAGAACCAAGACATATGTGCAAGAA
CATTCTGTCGTTGATCCCGTAGAAAAAATAATGGAGCTTAAATCTACTAATATTTCATTTACAAATATGGTTTCAGTGGA
TGAGAGACTTATATACAAACCACATCCTCAGGACCCAGAAAAAACCGTTCTGACTCAGGAAGCCATCATCTCGGTGAAAG
GAGTCAGCCTCAGCAGTTACCTTGAAGGGCTGATGGCGAGCACAATATCTTCAAATGCTAATAAAGGCAGAGAAGCAATG
GAATGGGTAATACATAAACTAAATGCTGAGATTGAAGAATTGGCAGCTTCAGCAAGAGGAAGCATACGGACACCAATGGC
GGCGGCGGCATTTGTAGAGAAATGA

Library Parental gene expression (RPM)
SRP017611_liver 8 .31 RPM
SRP017611_kidney 8 .17 RPM
SRP017611_brain 9 .15 RPM
SRP040447_lung 9 .86 RPM
SRP040447_skeletal_muscle 13 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000004402 ortholog_one2one 3 retrogenes
retro_btau_1006, retro_btau_1346, retro_btau_996,
Canis familiaris ENSCAFG00000012220 ortholog_one2one 1 retrogene
retro_cfam_1293,
Callithrix jacchus ENSCJAG00000018905 ortholog_one2many 4 retrogenes
retro_cjac_1286, retro_cjac_2921, retro_cjac_3171, retro_cjac_3236,
Dasypus novemcinctus ENSDNOG00000014548 ortholog_one2one 3 retrogenes
retro_dnov_1402, retro_dnov_2032, retro_dnov_2311,
Equus caballus ENSECAG00000000513 ortholog_one2one 1 retrogene
retro_ecab_409,
Erinaceus europaeus ENSEEUG00000003697 ortholog_one2one 4 retrogenes
retro_eeur_244, retro_eeur_34, retro_eeur_389, retro_eeur_406,
Felis catus ENSFCAG00000031431 ortholog_one2one 1 retrogene
retro_fcat_1499,
Homo sapiens ENSG00000101166 ortholog_one2one 6 retrogenes
retro_hsap_310, retro_hsap_3166, retro_hsap_3167, retro_hsap_3311, retro_hsap_3783, retro_hsap_4227,
Gorilla gorilla ENSGGOG00000004803 ortholog_one2one 5 retrogenes
retro_ggor_1349, retro_ggor_1350, retro_ggor_2544, retro_ggor_2545, retro_ggor_2830,
Microcebus murinus ENSMICG00000014902 ortholog_one2one 12 retrogenes
retro_mmur_101, retro_mmur_1111, retro_mmur_1143, retro_mmur_1299, retro_mmur_1304, retro_mmur_1318, retro_mmur_1391, retro_mmur_1400, retro_mmur_1604, retro_mmur_512, retro_mmur_659, retro_mmur_912,
Myotis lucifugus ENSMLUG00000014907 ortholog_one2many 2 retrogenes
retro_mluc_1887, retro_mluc_845,
Macaca mulatta ENSMMUG00000007560 ortholog_one2many 4 retrogenes
retro_mmul_1155, retro_mmul_1644, retro_mmul_2123, retro_mmul_539,
Monodelphis domestica ENSMODG00000016608 ortholog_one2one 5 retrogenes
retro_mdom_1596, retro_mdom_1619, retro_mdom_1620, retro_mdom_1655, retro_mdom_405,
Mustela putorius furo ENSMPUG00000007075 ortholog_one2one 1 retrogene
retro_mputfur_1586,
Nomascus leucogenys ENSNLEG00000009579 ortholog_one2one 3 retrogenes
retro_nleu_1118, retro_nleu_2497, retro_nleu_2498,
Oryctolagus cuniculus ENSOCUG00000005621 possible_ortholog 8 retrogenes
retro_ocun_1944, retro_ocun_1954, retro_ocun_455, retro_ocun_486, retro_ocun_549, retro_ocun_619, retro_ocun_775, retro_ocun_926,
Otolemur garnettii ENSOGAG00000013382 ortholog_one2one 10 retrogenes
retro_ogar_1037, retro_ogar_1650, retro_ogar_2233, retro_ogar_2972, retro_ogar_3009, retro_ogar_3120, retro_ogar_3281, retro_ogar_3378, retro_ogar_3389, retro_ogar_3392,
Pongo abelii ENSPPYG00000011182 ortholog_one2one 7 retrogenes
retro_pabe_1462, retro_pabe_2631, retro_pabe_2632, retro_pabe_2731, retro_pabe_3089, retro_pabe_3411, retro_pabe_371,
Pan troglodytes ENSPTRG00000013682 ortholog_one2one 5 retrogenes
retro_ptro_2160, retro_ptro_2273, retro_ptro_251, retro_ptro_252, retro_ptro_2564,
Pteropus vampyrus ENSPVAG00000005226 ortholog_one2one 2 retrogenes
retro_pvam_1075, retro_pvam_1445,
Sus scrofa ENSSSCG00000007525 ortholog_one2one 3 retrogenes
retro_sscr_161, retro_sscr_258, retro_sscr_959,
Tupaia belangeri ENSTBEG00000000493 ortholog_one2one 1 retrogene
retro_tbel_1407,
Tarsius syrichta ENSTSYG00000012533 ortholog_one2one 2 retrogenes
retro_tsyr_2061, retro_tsyr_250,
Tursiops truncatus ENSTTRG00000008417 ortholog_one2one 2 retrogenes
retro_ttru_621, retro_ttru_818,
Vicugna pacos ENSVPAG00000001044 ortholog_one2one 2 retrogenes
retro_vpac_224, retro_vpac_359,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cpor_456 64.03 71.13
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cpor_468 62.11 95.36
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_cpor_1285 68.57 52.06
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_cpor_1412 58.65 51.55
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCPOG00000012397 retrocopies