RetrogeneDB ID: | retro_cpor_456 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_16:33879993..33880406(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SLMO2 | ||
Ensembl ID: | ENSCPOG00000012397 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 64.03 % |
Parental protein coverage: | 71.13 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | HRLLSTEWGLPSI-VKSIIGAARTKTYVQEHSVVDPVEKIMELKSTNISFTNMVSVDERLIYKPHPQDPE |
.RLL.TEWGLPSI..K...GAA..KTY.Q.H.VVDP.EK.M.LK.TNISFTNMVS.DERL.YK.H.QD.E | |
Retrocopy | NRLLCTEWGLPSI<MKTGMGAAKNKTYMQGHPVVDPIEKAMGLKTTNISFTNMVSIDERLTYKLHSQDAE |
Parental | KTVLTQEAIISVKGVSLSSYLEGLMASTISSNANKGREAMEWVIHKLNAEIEELAASARGSIRTPMAAA |
K.VLTQ...I..K.VSL.S.LEGL......SN.NKG..AM..VIH.LNAE.EEL.AS...S.RTPM..A | |
Retrocopy | KNVLTQFVEITAKSVSLVSCLEGLVTTMTFSNVNKGHIAMD*VIHTLNAEMEELVASSKESARTPMKGA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 9 .15 RPM |
SRP017611_kidney | 0 .00 RPM | 8 .17 RPM |
SRP017611_liver | 0 .00 RPM | 8 .31 RPM |
SRP040447_lung | 0 .00 RPM | 9 .86 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 13 .83 RPM |