RetrogeneDB ID: | retro_pvam_1298 | ||
Retrocopylocation | Organism: | Megabat (Pteropus vampyrus) | |
Coordinates: | scaffold_5748:49168..49885(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSPVAG00000012882 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 79.92 % |
Parental protein coverage: | 90.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFI |
MA.GPKKHL...AAPK.WMLDKLTGVF.P..ST.PHKLR..LPLIIF.RNRLKYA.TGDEVKKIC.Q.FI | |
Retrocopy | MACGPKKHLECIAAPKPWMLDKLTGVFPPCSSTSPHKLRGYLPLIIFSRNRLKYAMTGDEVKKICIQQFI |
Parental | KIDGKVRTDVTYPAGFMDVISIDKTGENFRLVYDTKGRFAVHRITTEEAKYKLCKVRKIFVGTKGIPHLV |
KID.KV.TDVTYPAGFMDVISIDKT.EN..L.YD..G.F..H.IT.E.AKYKLCKVRK.FV.TKGIPHLV | |
Retrocopy | KIDSKVWTDVTYPAGFMDVISIDKTRENLCLIYDIRGHFPIHQITPEKAKYKLCKVRKTFVSTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
.HDA.T..YPDPLIKVN.TI.IDL.TGKITDFIKFDTGNLCMVT.G.NLGRIGVITNRE.H.GSFDVV.V | |
Retrocopy | IHDACTMCYPDPLIKVNGTIRIDLQTGKITDFIKFDTGNLCMVTVGDNLGRIGVITNRESHSGSFDVVNV |
Parental | KDANGNSFATRLSNIFVIGKGNKPWISLP |
KDANG.SFATRLSNI..IGK.NKPW.SLP | |
Retrocopy | KDANGDSFATRLSNICIIGKDNKPWLSLP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |