Parental gene:

RPS4X, ENSSTOG00000028692

Aliases:None
Description:ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424]
Organism:Squirrel (Ictidomys tridecemlineatus)
Coordinates:JH393572.1:1364314..1367777(-)


>ENSSTOG00000028692
CAGGCTCGTGGTCCCAAGAAGCATCTGAAGCGGGTAGCAGCTCCAAAGCATTGGATGCTGGATAAATTGACTGGTGTGTT
TGCTCCTCGTCCATCCACTGGTCCCCACAAGCTGAGAGAATGTCTTCCTCTCATCATTTTTCTAAGGAACAGACTTAAGT
ATGCCCTGACAGGAGATGAAGTAAAAAAGATTTGCATGCAGCGCTTCATCAAGATTGATGGGAAAGTCCGAACCGATATA
ACCTACCCTGCCGGTTTTATGGATGTCATCAGCATTGATAAGACTGGAGAGAATTTCCGTCTGATCTATGACACCAAGGG
TCGTTTTGCTGTTCATCGCATTACACCTGAGGAGGCCAAGTACAAGTTGTGCAAAGTGAGAAAGATATTTGTGGGCACAA
AAGGAATCCCTCATCTGGTGACTCATGATGCTCGAACCATTCGATACCCTGATCCCCTAATCAAGGTGAATGATACCATT
CAGATTGATTTGGAGACTGGCAAGATTACTGACTTCATCAAGTTTGACACTGGTAACCTGTGTATGGTGACCGGAGGTGC
TAACTTGGGAAGAATTGGTGTGATTACCAACAGAGAGAGACATCCTGGCTCTTTTGACGTGGTTCATGTGAAAGATGCCA
ATGGCAACAGCTTTGCCACCCGGCTCTCCAACATTTTTGTTATTGGCAAAGGCAACAAACCATGGATTTCTCTTCCCCGA
GGAAAAGGAATCCGACTCACCATTGCTGAAGAGAGAGACAAGAGACTGGCTGCCAAACAGAGCAGTGGGTGA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014601 ortholog_one2one 1 retrogene
retro_acar_82,
Ailuropoda melanoleuca ENSAMEG00000005805 possible_ortholog 14 retrogenes
retro_amel_1003, retro_amel_1128, retro_amel_1296, retro_amel_1381, retro_amel_1695, retro_amel_1869, retro_amel_195, retro_amel_259, retro_amel_327, retro_amel_576, retro_amel_767, retro_amel_869, retro_amel_968, retro_amel_971,
Bos taurus ENSBTAG00000018800 possible_ortholog 5 retrogenes
retro_btau_119, retro_btau_125, retro_btau_146, retro_btau_33, retro_btau_76,
Canis familiaris ENSCAFG00000017151 possible_ortholog 2 retrogenes
retro_cfam_165, retro_cfam_194,
Callithrix jacchus ENSCJAG00000004192 possible_ortholog 2 retrogenes
retro_cjac_19, retro_cjac_361,
Cavia porcellus ENSCPOG00000006337 ortholog_one2one 3 retrogenes
retro_cpor_1023, retro_cpor_1075, retro_cpor_31,
Equus caballus ENSECAG00000010852 ortholog_one2one 6 retrogenes
retro_ecab_34, retro_ecab_435, retro_ecab_443, retro_ecab_614, retro_ecab_757, retro_ecab_850,
Felis catus ENSFCAG00000012041 possible_ortholog 11 retrogenes
retro_fcat_1155, retro_fcat_1498, retro_fcat_1562, retro_fcat_1751, retro_fcat_1773, retro_fcat_2024, retro_fcat_229, retro_fcat_290, retro_fcat_454, retro_fcat_563, retro_fcat_766,
Homo sapiens ENSG00000129824 possible_ortholog 1 retrogene
retro_hsap_1704,
Gorilla gorilla ENSGGOG00000023079 possible_ortholog 18 retrogenes
retro_ggor_1278, retro_ggor_1319, retro_ggor_1354, retro_ggor_1367, retro_ggor_1478, retro_ggor_1479, retro_ggor_1517, retro_ggor_1520, retro_ggor_1689, retro_ggor_223, retro_ggor_2676, retro_ggor_2719, retro_ggor_572, retro_ggor_711, retro_ggor_844, retro_ggor_894, retro_ggor_895, retro_ggor_939,
Loxodonta africana ENSLAFG00000002654 ortholog_one2one 4 retrogenes
retro_lafr_1007, retro_lafr_1081, retro_lafr_1238, retro_lafr_208,
Meleagris gallopavo ENSMGAG00000009671 ortholog_one2many 1 retrogene
retro_mgal_3,
Myotis lucifugus ENSMLUG00000011685 possible_ortholog 5 retrogenes
retro_mluc_1638, retro_mluc_2253, retro_mluc_301, retro_mluc_536, retro_mluc_736,
Macaca mulatta ENSMMUG00000003295 possible_ortholog 7 retrogenes
retro_mmul_1243, retro_mmul_1589, retro_mmul_1895, retro_mmul_1999, retro_mmul_2338, retro_mmul_43, retro_mmul_97,
Monodelphis domestica ENSMODG00000011070 possible_ortholog 1 retrogene
retro_mdom_238,
Mustela putorius furo ENSMPUG00000005294 ortholog_one2one 11 retrogenes
retro_mputfur_1044, retro_mputfur_1176, retro_mputfur_1325, retro_mputfur_1326, retro_mputfur_1393, retro_mputfur_160, retro_mputfur_205, retro_mputfur_48, retro_mputfur_725, retro_mputfur_876, retro_mputfur_988,
Mus musculus ENSMUSG00000031320 possible_ortholog 13 retrogenes
retro_mmus_1092, retro_mmus_1686, retro_mmus_2052, retro_mmus_2197, retro_mmus_2487, retro_mmus_2541, retro_mmus_2916, retro_mmus_3025, retro_mmus_3702, retro_mmus_499, retro_mmus_797, retro_mmus_92, retro_mmus_987,
Otolemur garnettii ENSOGAG00000011808 possible_ortholog 2 retrogenes
retro_ogar_121, retro_ogar_229,
Pongo abelii ENSPPYG00000020462 possible_ortholog 24 retrogenes
retro_pabe_1005, retro_pabe_1401, retro_pabe_1472, retro_pabe_1524, retro_pabe_1586, retro_pabe_1657, retro_pabe_1673, retro_pabe_1702, retro_pabe_1784, retro_pabe_1948, retro_pabe_2455, retro_pabe_2629, retro_pabe_2836, retro_pabe_2923, retro_pabe_3275, retro_pabe_3325, retro_pabe_340, retro_pabe_493, retro_pabe_579, retro_pabe_580, retro_pabe_679, retro_pabe_891, retro_pabe_921, retro_pabe_954,
Pan troglodytes ENSPTRG00000022025 possible_ortholog 9 retrogenes
retro_ptro_1280, retro_ptro_131, retro_ptro_1366, retro_ptro_1367, retro_ptro_1408, retro_ptro_2276, retro_ptro_3032, retro_ptro_728, retro_ptro_784,
Pan troglodytes ENSPTRG00000022470 possible_ortholog 1 retrogene
retro_ptro_1153,
Rattus norvegicus ENSRNOG00000003201 ortholog_one2one 1 retrogene
retro_rnor_135,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_itri_291 91.21 69.20
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2. retro_itri_306 81.54 73.38
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3. retro_itri_368 77.44 99.62
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4. retro_itri_495 92.95 91.63
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5. retro_itri_738 84.66 61.98
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6. retro_itri_985 90.46 99.62
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7. retro_itri_1179 57.67 70.34
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8. retro_itri_1607 82.59 75.67
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Download FASTA sequences of all ENSSTOG00000028692 retrocopies